Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02440 and PGA1_c02450 overlap by 4 nucleotides PGA1_c02450 and PGA1_c02460 are separated by 86 nucleotides
PGA1_c02440: PGA1_c02440 - putative ATP-binding/permease fusion ABC transporter, at 220,842 to 223,208
_c02440
PGA1_c02450: PGA1_c02450 - putative outer membrane efflux protein, at 223,205 to 224,524
_c02450
PGA1_c02460: PGA1_c02460 - hypothetical protein, at 224,611 to 228,288
_c02460
Position (kb) 223
224
225 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 222.260 kb on - strand, within PGA1_c02440 at 222.261 kb on + strand, within PGA1_c02440 at 222.269 kb on - strand, within PGA1_c02440 at 222.319 kb on + strand, within PGA1_c02440 at 222.327 kb on - strand, within PGA1_c02440 at 222.387 kb on + strand, within PGA1_c02440 at 222.390 kb on - strand, within PGA1_c02440 at 222.395 kb on - strand, within PGA1_c02440 at 222.395 kb on - strand, within PGA1_c02440 at 222.401 kb on - strand, within PGA1_c02440 at 222.408 kb on + strand, within PGA1_c02440 at 222.416 kb on + strand, within PGA1_c02440 at 222.416 kb on + strand, within PGA1_c02440 at 222.416 kb on - strand, within PGA1_c02440 at 222.416 kb on - strand, within PGA1_c02440 at 222.419 kb on + strand, within PGA1_c02440 at 222.422 kb on - strand, within PGA1_c02440 at 222.424 kb on - strand, within PGA1_c02440 at 222.461 kb on + strand, within PGA1_c02440 at 222.461 kb on + strand, within PGA1_c02440 at 222.532 kb on + strand, within PGA1_c02440 at 222.598 kb on - strand, within PGA1_c02440 at 222.598 kb on - strand, within PGA1_c02440 at 222.611 kb on + strand, within PGA1_c02440 at 222.704 kb on - strand, within PGA1_c02440 at 222.790 kb on - strand, within PGA1_c02440 at 222.819 kb on + strand, within PGA1_c02440 at 222.830 kb on + strand, within PGA1_c02440 at 222.897 kb on + strand, within PGA1_c02440 at 222.958 kb on + strand, within PGA1_c02440 at 222.966 kb on - strand, within PGA1_c02440 at 222.966 kb on - strand, within PGA1_c02440 at 223.030 kb on - strand at 223.062 kb on - strand at 223.094 kb on - strand at 223.094 kb on - strand at 223.125 kb on - strand at 223.184 kb on - strand at 223.186 kb on + strand at 223.203 kb on + strand at 223.254 kb on + strand at 223.267 kb on - strand at 223.312 kb on + strand at 223.315 kb on - strand at 223.341 kb on + strand, within PGA1_c02450 at 223.354 kb on - strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.410 kb on - strand, within PGA1_c02450 at 223.410 kb on - strand, within PGA1_c02450 at 223.444 kb on - strand, within PGA1_c02450 at 223.499 kb on + strand, within PGA1_c02450 at 223.569 kb on - strand, within PGA1_c02450 at 223.579 kb on + strand, within PGA1_c02450 at 223.587 kb on - strand, within PGA1_c02450 at 223.605 kb on - strand, within PGA1_c02450 at 223.606 kb on + strand, within PGA1_c02450 at 223.634 kb on + strand, within PGA1_c02450 at 223.640 kb on - strand, within PGA1_c02450 at 223.670 kb on - strand, within PGA1_c02450 at 223.670 kb on - strand, within PGA1_c02450 at 223.672 kb on + strand, within PGA1_c02450 at 223.672 kb on + strand, within PGA1_c02450 at 223.680 kb on - strand, within PGA1_c02450 at 223.680 kb on - strand, within PGA1_c02450 at 223.680 kb on - strand, within PGA1_c02450 at 223.700 kb on + strand, within PGA1_c02450 at 223.742 kb on + strand, within PGA1_c02450 at 223.747 kb on + strand, within PGA1_c02450 at 223.843 kb on - strand, within PGA1_c02450 at 223.872 kb on + strand, within PGA1_c02450 at 223.873 kb on - strand, within PGA1_c02450 at 223.892 kb on + strand, within PGA1_c02450 at 223.900 kb on - strand, within PGA1_c02450 at 223.924 kb on - strand, within PGA1_c02450 at 223.962 kb on - strand, within PGA1_c02450 at 223.962 kb on - strand, within PGA1_c02450 at 223.962 kb on - strand, within PGA1_c02450 at 224.002 kb on + strand, within PGA1_c02450 at 224.002 kb on + strand, within PGA1_c02450 at 224.002 kb on + strand, within PGA1_c02450 at 224.002 kb on + strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.019 kb on + strand, within PGA1_c02450 at 224.027 kb on - strand, within PGA1_c02450 at 224.050 kb on + strand, within PGA1_c02450 at 224.227 kb on + strand, within PGA1_c02450 at 224.227 kb on + strand, within PGA1_c02450 at 224.235 kb on - strand, within PGA1_c02450 at 224.235 kb on - strand, within PGA1_c02450 at 224.235 kb on - strand, within PGA1_c02450 at 224.235 kb on - strand, within PGA1_c02450 at 224.245 kb on - strand, within PGA1_c02450 at 224.250 kb on - strand, within PGA1_c02450 at 224.438 kb on + strand at 224.439 kb on + strand at 224.468 kb on + strand at 224.476 kb on - strand at 224.532 kb on + strand at 224.532 kb on + strand at 224.532 kb on + strand at 224.532 kb on + strand at 224.535 kb on - strand at 224.540 kb on - strand at 224.586 kb on - strand at 224.668 kb on + strand at 224.676 kb on - strand at 224.703 kb on + strand at 224.728 kb on - strand at 224.730 kb on + strand at 224.730 kb on + strand at 224.730 kb on + strand at 224.738 kb on - strand at 224.811 kb on + strand at 224.819 kb on - strand at 224.898 kb on - strand at 224.928 kb on + strand at 224.936 kb on + strand at 224.946 kb on - strand at 224.965 kb on + strand at 224.970 kb on + strand at 225.009 kb on - strand, within PGA1_c02460 at 225.050 kb on - strand, within PGA1_c02460 at 225.057 kb on - strand, within PGA1_c02460 at 225.110 kb on - strand, within PGA1_c02460 at 225.190 kb on + strand, within PGA1_c02460 at 225.190 kb on + strand, within PGA1_c02460 at 225.192 kb on + strand, within PGA1_c02460 at 225.198 kb on - strand, within PGA1_c02460 at 225.198 kb on - strand, within PGA1_c02460 at 225.200 kb on - strand, within PGA1_c02460 at 225.200 kb on - strand, within PGA1_c02460 at 225.200 kb on - strand, within PGA1_c02460 at 225.231 kb on + strand, within PGA1_c02460 at 225.281 kb on + strand, within PGA1_c02460 at 225.346 kb on + strand, within PGA1_c02460 at 225.354 kb on + strand, within PGA1_c02460 at 225.362 kb on - strand, within PGA1_c02460 at 225.366 kb on + strand, within PGA1_c02460
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 222,260 - PGA1_c02440 0.60 +3.6 222,261 + PGA1_c02440 0.60 +3.0 222,269 - PGA1_c02440 0.60 +3.7 222,319 + PGA1_c02440 0.62 +3.4 222,327 - PGA1_c02440 0.63 +2.6 222,387 + PGA1_c02440 0.65 +2.8 222,390 - PGA1_c02440 0.65 +2.3 222,395 - PGA1_c02440 0.66 +3.2 222,395 - PGA1_c02440 0.66 +2.1 222,401 - PGA1_c02440 0.66 +2.7 222,408 + PGA1_c02440 0.66 +3.8 222,416 + PGA1_c02440 0.66 +3.7 222,416 + PGA1_c02440 0.66 +4.7 222,416 - PGA1_c02440 0.66 +2.6 222,416 - PGA1_c02440 0.66 +2.8 222,419 + PGA1_c02440 0.67 +2.5 222,422 - PGA1_c02440 0.67 +2.9 222,424 - PGA1_c02440 0.67 +2.9 222,461 + PGA1_c02440 0.68 +4.0 222,461 + PGA1_c02440 0.68 +1.8 222,532 + PGA1_c02440 0.71 +3.9 222,598 - PGA1_c02440 0.74 +3.5 222,598 - PGA1_c02440 0.74 +2.0 222,611 + PGA1_c02440 0.75 +2.4 222,704 - PGA1_c02440 0.79 +3.6 222,790 - PGA1_c02440 0.82 +4.2 222,819 + PGA1_c02440 0.84 +2.9 222,830 + PGA1_c02440 0.84 +4.2 222,897 + PGA1_c02440 0.87 +2.9 222,958 + PGA1_c02440 0.89 +3.7 222,966 - PGA1_c02440 0.90 +1.3 222,966 - PGA1_c02440 0.90 +2.9 223,030 - +3.0 223,062 - +2.5 223,094 - +2.5 223,094 - +4.2 223,125 - +3.8 223,184 - +3.1 223,186 + +2.7 223,203 + +3.2 223,254 + +2.5 223,267 - +2.6 223,312 + +3.2 223,315 - +4.1 223,341 + PGA1_c02450 0.10 +3.7 223,354 - PGA1_c02450 0.11 +3.6 223,356 + PGA1_c02450 0.11 +2.3 223,356 + PGA1_c02450 0.11 +2.9 223,356 + PGA1_c02450 0.11 +3.5 223,356 + PGA1_c02450 0.11 +3.3 223,356 + PGA1_c02450 0.11 +2.7 223,356 + PGA1_c02450 0.11 +2.1 223,356 + PGA1_c02450 0.11 +2.9 223,356 + PGA1_c02450 0.11 +3.3 223,356 + PGA1_c02450 0.11 +2.5 223,364 - PGA1_c02450 0.12 +2.8 223,364 - PGA1_c02450 0.12 +4.3 223,364 - PGA1_c02450 0.12 +3.0 223,364 - PGA1_c02450 0.12 +3.2 223,364 - PGA1_c02450 0.12 +3.5 223,364 - PGA1_c02450 0.12 +3.2 223,410 - PGA1_c02450 0.16 +3.1 223,410 - PGA1_c02450 0.16 +3.1 223,444 - PGA1_c02450 0.18 +3.7 223,499 + PGA1_c02450 0.22 +3.2 223,569 - PGA1_c02450 0.28 +3.4 223,579 + PGA1_c02450 0.28 +2.6 223,587 - PGA1_c02450 0.29 +3.9 223,605 - PGA1_c02450 0.30 +2.9 223,606 + PGA1_c02450 0.30 +3.1 223,634 + PGA1_c02450 0.33 +3.1 223,640 - PGA1_c02450 0.33 +2.9 223,670 - PGA1_c02450 0.35 +3.0 223,670 - PGA1_c02450 0.35 +3.4 223,672 + PGA1_c02450 0.35 +3.1 223,672 + PGA1_c02450 0.35 +1.7 223,680 - PGA1_c02450 0.36 +3.3 223,680 - PGA1_c02450 0.36 +3.2 223,680 - PGA1_c02450 0.36 +3.0 223,700 + PGA1_c02450 0.38 +3.3 223,742 + PGA1_c02450 0.41 +2.3 223,747 + PGA1_c02450 0.41 +2.7 223,843 - PGA1_c02450 0.48 +3.9 223,872 + PGA1_c02450 0.51 +2.6 223,873 - PGA1_c02450 0.51 +2.4 223,892 + PGA1_c02450 0.52 +2.6 223,900 - PGA1_c02450 0.53 +3.2 223,924 - PGA1_c02450 0.54 +3.0 223,962 - PGA1_c02450 0.57 +3.7 223,962 - PGA1_c02450 0.57 +4.2 223,962 - PGA1_c02450 0.57 +2.4 224,002 + PGA1_c02450 0.60 +2.0 224,002 + PGA1_c02450 0.60 +1.8 224,002 + PGA1_c02450 0.60 +2.4 224,002 + PGA1_c02450 0.60 +3.0 224,010 - PGA1_c02450 0.61 +3.1 224,010 - PGA1_c02450 0.61 +4.2 224,010 - PGA1_c02450 0.61 +2.6 224,010 - PGA1_c02450 0.61 +3.2 224,010 - PGA1_c02450 0.61 +2.9 224,010 - PGA1_c02450 0.61 +2.9 224,019 + PGA1_c02450 0.62 +3.4 224,027 - PGA1_c02450 0.62 +2.9 224,050 + PGA1_c02450 0.64 +3.5 224,227 + PGA1_c02450 0.77 +3.3 224,227 + PGA1_c02450 0.77 +2.7 224,235 - PGA1_c02450 0.78 +3.3 224,235 - PGA1_c02450 0.78 +3.2 224,235 - PGA1_c02450 0.78 +2.9 224,235 - PGA1_c02450 0.78 +4.3 224,245 - PGA1_c02450 0.79 +3.0 224,250 - PGA1_c02450 0.79 +2.6 224,438 + +3.2 224,439 + +2.6 224,468 + +2.4 224,476 - +3.3 224,532 + +1.6 224,532 + +2.0 224,532 + +1.5 224,532 + +2.5 224,535 - +2.9 224,540 - +0.7 224,586 - +1.2 224,668 + +2.9 224,676 - +2.7 224,703 + +2.7 224,728 - +3.5 224,730 + +3.5 224,730 + +3.4 224,730 + +2.1 224,738 - +4.9 224,811 + +4.7 224,819 - +4.2 224,898 - +2.0 224,928 + +3.5 224,936 + +2.2 224,946 - +3.4 224,965 + +2.4 224,970 + +3.7 225,009 - PGA1_c02460 0.11 +1.8 225,050 - PGA1_c02460 0.12 +2.4 225,057 - PGA1_c02460 0.12 +3.6 225,110 - PGA1_c02460 0.14 +3.1 225,190 + PGA1_c02460 0.16 +2.5 225,190 + PGA1_c02460 0.16 +3.0 225,192 + PGA1_c02460 0.16 +3.2 225,198 - PGA1_c02460 0.16 +3.1 225,198 - PGA1_c02460 0.16 +3.1 225,200 - PGA1_c02460 0.16 +3.1 225,200 - PGA1_c02460 0.16 +3.0 225,200 - PGA1_c02460 0.16 +3.2 225,231 + PGA1_c02460 0.17 +3.9 225,281 + PGA1_c02460 0.18 +2.7 225,346 + PGA1_c02460 0.20 +2.5 225,354 + PGA1_c02460 0.20 +4.1 225,362 - PGA1_c02460 0.20 +3.3 225,366 + PGA1_c02460 0.21 +2.9
Or see this region's nucleotide sequence