Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02430

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02420 and PGA1_c02430 are separated by 235 nucleotidesPGA1_c02430 and PGA1_c02440 overlap by 4 nucleotides PGA1_c02420: PGA1_c02420 - V8-like Glu-specific endopeptidase, at 218,727 to 219,440 _c02420 PGA1_c02430: PGA1_c02430 - type I secretion membrane fusion protein, HlyD family, at 219,676 to 220,845 _c02430 PGA1_c02440: PGA1_c02440 - putative ATP-binding/permease fusion ABC transporter, at 220,842 to 223,208 _c02440 Position (kb) 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 218.686 kb on + strandat 218.686 kb on + strandat 218.686 kb on + strandat 218.686 kb on + strandat 218.686 kb on + strandat 218.686 kb on + strandat 218.686 kb on + strandat 218.686 kb on + strandat 218.686 kb on + strandat 218.686 kb on + strandat 218.686 kb on + strandat 218.686 kb on + strandat 218.686 kb on + strandat 218.691 kb on + strandat 218.691 kb on + strandat 218.694 kb on - strandat 218.694 kb on - strandat 218.694 kb on - strandat 218.694 kb on - strandat 218.698 kb on + strandat 218.698 kb on + strandat 218.699 kb on - strandat 218.699 kb on - strandat 218.706 kb on - strandat 218.706 kb on - strandat 218.707 kb on - strandat 218.774 kb on + strandat 218.774 kb on + strandat 218.774 kb on + strandat 218.774 kb on + strandat 218.774 kb on + strandat 218.782 kb on - strandat 218.782 kb on - strandat 218.812 kb on - strand, within PGA1_c02420at 218.835 kb on + strand, within PGA1_c02420at 218.872 kb on - strand, within PGA1_c02420at 218.996 kb on + strand, within PGA1_c02420at 219.115 kb on + strand, within PGA1_c02420at 219.115 kb on - strand, within PGA1_c02420at 219.156 kb on - strand, within PGA1_c02420at 219.176 kb on + strand, within PGA1_c02420at 219.177 kb on + strand, within PGA1_c02420at 219.185 kb on - strand, within PGA1_c02420at 219.185 kb on - strand, within PGA1_c02420at 219.185 kb on - strand, within PGA1_c02420at 219.232 kb on - strand, within PGA1_c02420at 219.269 kb on - strand, within PGA1_c02420at 219.297 kb on + strand, within PGA1_c02420at 219.323 kb on - strand, within PGA1_c02420at 219.456 kb on + strandat 219.495 kb on - strandat 219.524 kb on - strandat 219.578 kb on - strandat 219.578 kb on - strandat 219.589 kb on + strandat 219.589 kb on + strandat 219.589 kb on + strandat 219.597 kb on - strandat 219.597 kb on - strandat 219.597 kb on - strandat 219.597 kb on - strandat 219.607 kb on - strandat 219.607 kb on - strandat 219.632 kb on + strandat 219.655 kb on + strandat 219.662 kb on + strandat 219.681 kb on - strandat 219.681 kb on - strandat 219.852 kb on - strand, within PGA1_c02430at 219.931 kb on + strand, within PGA1_c02430at 219.937 kb on + strand, within PGA1_c02430at 219.945 kb on - strand, within PGA1_c02430at 219.973 kb on + strand, within PGA1_c02430at 219.991 kb on - strand, within PGA1_c02430at 220.006 kb on - strand, within PGA1_c02430at 220.006 kb on - strand, within PGA1_c02430at 220.221 kb on + strand, within PGA1_c02430at 220.221 kb on + strand, within PGA1_c02430at 220.221 kb on + strand, within PGA1_c02430at 220.295 kb on + strand, within PGA1_c02430at 220.303 kb on - strand, within PGA1_c02430at 220.305 kb on + strand, within PGA1_c02430at 220.337 kb on + strand, within PGA1_c02430at 220.345 kb on - strand, within PGA1_c02430at 220.415 kb on + strand, within PGA1_c02430at 220.415 kb on + strand, within PGA1_c02430at 220.423 kb on - strand, within PGA1_c02430at 220.436 kb on + strand, within PGA1_c02430at 220.439 kb on - strand, within PGA1_c02430at 220.439 kb on - strand, within PGA1_c02430at 220.597 kb on + strand, within PGA1_c02430at 220.603 kb on + strand, within PGA1_c02430at 220.611 kb on - strand, within PGA1_c02430at 220.613 kb on + strand, within PGA1_c02430at 220.613 kb on + strand, within PGA1_c02430at 220.621 kb on - strand, within PGA1_c02430at 220.622 kb on + strand, within PGA1_c02430at 220.622 kb on + strand, within PGA1_c02430at 220.627 kb on + strand, within PGA1_c02430at 220.630 kb on - strand, within PGA1_c02430at 220.636 kb on - strand, within PGA1_c02430at 220.652 kb on - strand, within PGA1_c02430at 220.696 kb on + strand, within PGA1_c02430at 220.704 kb on - strand, within PGA1_c02430at 220.737 kb on + strandat 220.832 kb on - strandat 220.870 kb on + strandat 220.893 kb on + strandat 220.893 kb on + strandat 220.893 kb on + strandat 220.893 kb on + strandat 221.050 kb on + strandat 221.052 kb on - strandat 221.092 kb on - strand, within PGA1_c02440at 221.092 kb on - strand, within PGA1_c02440at 221.178 kb on + strand, within PGA1_c02440at 221.189 kb on + strand, within PGA1_c02440at 221.223 kb on - strand, within PGA1_c02440at 221.246 kb on + strand, within PGA1_c02440at 221.253 kb on - strand, within PGA1_c02440at 221.299 kb on - strand, within PGA1_c02440at 221.299 kb on - strand, within PGA1_c02440at 221.333 kb on + strand, within PGA1_c02440at 221.343 kb on + strand, within PGA1_c02440at 221.351 kb on - strand, within PGA1_c02440at 221.356 kb on - strand, within PGA1_c02440at 221.404 kb on + strand, within PGA1_c02440at 221.404 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.422 kb on - strand, within PGA1_c02440at 221.422 kb on - strand, within PGA1_c02440at 221.422 kb on - strand, within PGA1_c02440at 221.423 kb on + strand, within PGA1_c02440at 221.459 kb on + strand, within PGA1_c02440at 221.459 kb on + strand, within PGA1_c02440at 221.459 kb on + strand, within PGA1_c02440at 221.459 kb on + strand, within PGA1_c02440at 221.520 kb on + strand, within PGA1_c02440at 221.528 kb on - strand, within PGA1_c02440at 221.635 kb on + strand, within PGA1_c02440at 221.635 kb on + strand, within PGA1_c02440at 221.643 kb on - strand, within PGA1_c02440at 221.643 kb on - strand, within PGA1_c02440at 221.654 kb on - strand, within PGA1_c02440at 221.690 kb on + strand, within PGA1_c02440at 221.698 kb on - strand, within PGA1_c02440at 221.708 kb on - strand, within PGA1_c02440

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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218,686 + -0.7
218,686 + -2.3
218,686 + -0.7
218,686 + -0.9
218,686 + +0.7
218,686 + -0.4
218,686 + +0.3
218,686 + -0.4
218,686 + -2.9
218,686 + -1.2
218,686 + -1.8
218,686 + +0.7
218,686 + -0.6
218,691 + -0.7
218,691 + +0.1
218,694 - -2.0
218,694 - -1.3
218,694 - -0.6
218,694 - +0.1
218,698 + +0.7
218,698 + -1.3
218,699 - -1.7
218,699 - -0.9
218,706 - -0.9
218,706 - -1.3
218,707 - -1.5
218,774 + -0.9
218,774 + -0.3
218,774 + -2.1
218,774 + -0.7
218,774 + -0.6
218,782 - -0.9
218,782 - -0.9
218,812 - PGA1_c02420 0.12 +0.1
218,835 + PGA1_c02420 0.15 -2.0
218,872 - PGA1_c02420 0.20 -1.1
218,996 + PGA1_c02420 0.38 -1.2
219,115 + PGA1_c02420 0.54 -0.3
219,115 - PGA1_c02420 0.54 -0.1
219,156 - PGA1_c02420 0.60 -1.4
219,176 + PGA1_c02420 0.63 +0.1
219,177 + PGA1_c02420 0.63 -1.0
219,185 - PGA1_c02420 0.64 -0.4
219,185 - PGA1_c02420 0.64 -0.7
219,185 - PGA1_c02420 0.64 -2.0
219,232 - PGA1_c02420 0.71 -2.0
219,269 - PGA1_c02420 0.76 -0.9
219,297 + PGA1_c02420 0.80 -0.9
219,323 - PGA1_c02420 0.83 +1.2
219,456 + +0.0
219,495 - +0.1
219,524 - -0.4
219,578 - -0.4
219,578 - -0.0
219,589 + +0.4
219,589 + -0.1
219,589 + +0.6
219,597 - +0.4
219,597 - -1.9
219,597 - +0.1
219,597 - -0.7
219,607 - +0.1
219,607 - +1.3
219,632 + +0.5
219,655 + -0.4
219,662 + +0.1
219,681 - +0.5
219,681 - +1.6
219,852 - PGA1_c02430 0.15 +3.3
219,931 + PGA1_c02430 0.22 +3.1
219,937 + PGA1_c02430 0.22 +2.6
219,945 - PGA1_c02430 0.23 +2.6
219,973 + PGA1_c02430 0.25 +3.4
219,991 - PGA1_c02430 0.27 +2.7
220,006 - PGA1_c02430 0.28 +3.1
220,006 - PGA1_c02430 0.28 +3.0
220,221 + PGA1_c02430 0.47 +3.3
220,221 + PGA1_c02430 0.47 +3.1
220,221 + PGA1_c02430 0.47 +3.4
220,295 + PGA1_c02430 0.53 +2.7
220,303 - PGA1_c02430 0.54 +2.3
220,305 + PGA1_c02430 0.54 +2.7
220,337 + PGA1_c02430 0.56 +3.1
220,345 - PGA1_c02430 0.57 +3.8
220,415 + PGA1_c02430 0.63 +2.4
220,415 + PGA1_c02430 0.63 +3.6
220,423 - PGA1_c02430 0.64 +2.9
220,436 + PGA1_c02430 0.65 +3.7
220,439 - PGA1_c02430 0.65 +3.1
220,439 - PGA1_c02430 0.65 +2.9
220,597 + PGA1_c02430 0.79 +3.4
220,603 + PGA1_c02430 0.79 +1.8
220,611 - PGA1_c02430 0.80 +3.5
220,613 + PGA1_c02430 0.80 +2.6
220,613 + PGA1_c02430 0.80 +2.7
220,621 - PGA1_c02430 0.81 +3.3
220,622 + PGA1_c02430 0.81 +2.6
220,622 + PGA1_c02430 0.81 +2.6
220,627 + PGA1_c02430 0.81 +2.4
220,630 - PGA1_c02430 0.82 +3.0
220,636 - PGA1_c02430 0.82 +2.8
220,652 - PGA1_c02430 0.83 +3.8
220,696 + PGA1_c02430 0.87 +2.7
220,704 - PGA1_c02430 0.88 +3.1
220,737 + +2.4
220,832 - +3.9
220,870 + +3.2
220,893 + +3.5
220,893 + +3.4
220,893 + +2.4
220,893 + +4.2
221,050 + +2.1
221,052 - +2.9
221,092 - PGA1_c02440 0.11 +3.0
221,092 - PGA1_c02440 0.11 +3.9
221,178 + PGA1_c02440 0.14 +2.7
221,189 + PGA1_c02440 0.15 +3.2
221,223 - PGA1_c02440 0.16 +3.2
221,246 + PGA1_c02440 0.17 +3.2
221,253 - PGA1_c02440 0.17 +3.8
221,299 - PGA1_c02440 0.19 +2.0
221,299 - PGA1_c02440 0.19 +2.8
221,333 + PGA1_c02440 0.21 +2.2
221,343 + PGA1_c02440 0.21 +4.1
221,351 - PGA1_c02440 0.22 +3.3
221,356 - PGA1_c02440 0.22 +2.9
221,404 + PGA1_c02440 0.24 +2.0
221,404 + PGA1_c02440 0.24 +3.4
221,414 + PGA1_c02440 0.24 +3.1
221,414 + PGA1_c02440 0.24 +2.6
221,414 + PGA1_c02440 0.24 +2.6
221,414 + PGA1_c02440 0.24 +4.9
221,414 + PGA1_c02440 0.24 +2.9
221,414 + PGA1_c02440 0.24 +2.7
221,414 + PGA1_c02440 0.24 +2.8
221,414 + PGA1_c02440 0.24 +3.8
221,422 - PGA1_c02440 0.25 +3.0
221,422 - PGA1_c02440 0.25 +2.3
221,422 - PGA1_c02440 0.25 +2.8
221,423 + PGA1_c02440 0.25 +2.4
221,459 + PGA1_c02440 0.26 +3.3
221,459 + PGA1_c02440 0.26 +3.2
221,459 + PGA1_c02440 0.26 +3.0
221,459 + PGA1_c02440 0.26 +3.5
221,520 + PGA1_c02440 0.29 +2.5
221,528 - PGA1_c02440 0.29 +3.1
221,635 + PGA1_c02440 0.34 +2.7
221,635 + PGA1_c02440 0.34 +3.1
221,643 - PGA1_c02440 0.34 +3.6
221,643 - PGA1_c02440 0.34 +2.6
221,654 - PGA1_c02440 0.34 +5.1
221,690 + PGA1_c02440 0.36 +3.3
221,698 - PGA1_c02440 0.36 +3.3
221,708 - PGA1_c02440 0.37 +3.0

Or see this region's nucleotide sequence