Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1 and HP15_2 are separated by 123 nucleotides HP15_2 and HP15_3 are separated by 29 nucleotides HP15_3 and HP15_4 are separated by 424 nucleotides
HP15_1: HP15_1 - hypothetical protein, at 261 to 1,085
_1
HP15_2: HP15_2 - acyl-CoA dehydrogenase domain protein, at 1,209 to 2,378
_2
HP15_3: HP15_3 - transcriptional Regulator, MerR family protein-like protein, at 2,408 to 2,674
_3
HP15_4: HP15_4 - alcohol dehydrogenase zinc-binding domain protein, at 3,099 to 4,025
_4
Position (kb) 1
2
3 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.433 kb on + strand, within HP15_1 at 0.446 kb on - strand, within HP15_1 at 0.479 kb on - strand, within HP15_1 at 0.497 kb on - strand, within HP15_1 at 1.161 kb on + strand at 1.191 kb on - strand at 1.202 kb on - strand at 1.477 kb on + strand, within HP15_2 at 1.658 kb on + strand, within HP15_2 at 2.687 kb on + strand at 2.751 kb on + strand at 2.762 kb on + strand at 2.852 kb on + strand at 2.853 kb on + strand at 2.860 kb on - strand at 3.063 kb on + strand at 3.063 kb on + strand at 3.065 kb on + strand at 3.073 kb on + strand at 3.083 kb on - strand at 3.107 kb on - strand at 3.138 kb on + strand at 3.188 kb on + strand at 3.222 kb on + strand, within HP15_4 at 3.266 kb on + strand, within HP15_4 at 3.274 kb on - strand, within HP15_4 at 3.274 kb on - strand, within HP15_4 at 3.279 kb on - strand, within HP15_4 at 3.350 kb on - strand, within HP15_4 at 3.364 kb on + strand, within HP15_4
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 433 + HP15_1 0.21 -0.2 446 - HP15_1 0.22 +0.9 479 - HP15_1 0.26 +0.0 497 - HP15_1 0.29 +0.6 1,161 + -0.7 1,191 - -0.8 1,202 - -1.1 1,477 + HP15_2 0.23 -1.2 1,658 + HP15_2 0.38 -0.5 2,687 + +0.9 2,751 + -0.7 2,762 + -0.4 2,852 + +0.1 2,853 + +0.3 2,860 - +0.5 3,063 + -0.1 3,063 + -0.2 3,065 + -0.8 3,073 + +0.3 3,083 - -0.6 3,107 - -0.8 3,138 + -1.8 3,188 + +0.5 3,222 + HP15_4 0.13 +0.1 3,266 + HP15_4 0.18 +2.3 3,274 - HP15_4 0.19 -0.0 3,274 - HP15_4 0.19 -0.4 3,279 - HP15_4 0.19 +0.3 3,350 - HP15_4 0.27 -1.7 3,364 + HP15_4 0.29 +0.3
Or see this region's nucleotide sequence