Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01150

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
107,721	+		PGA1_c01140	0.68	-2.1
107,757	+		PGA1_c01140	0.70	-2.3
107,811	+		PGA1_c01140	0.74	-1.3
107,814	-		PGA1_c01140	0.74	-3.0
107,819	-		PGA1_c01140	0.74	-1.6
107,839	+		PGA1_c01140	0.75	-1.6
107,839	+		PGA1_c01140	0.75	-2.1
107,847	-		PGA1_c01140	0.76	-2.4
107,914	+		PGA1_c01140	0.80	-1.3
107,930	+		PGA1_c01140	0.81	-4.1
107,930	+		PGA1_c01140	0.81	-3.2
107,960	+		PGA1_c01140	0.83	-2.9
107,982	-		PGA1_c01140	0.84	-2.1
108,052	-		PGA1_c01140	0.89	-1.3
108,120	+				-4.2
108,128	-				-3.4
108,128	-				-3.2
108,153	-				-3.4
108,179	-				-3.1
108,194	-				-2.4
108,256	+				-3.4
108,256	-				-3.9
108,265	-				-3.0
108,324	+				+1.1
108,338	+				-1.7
108,350	+				-2.3
108,350	+				-1.6
108,350	+				-1.1
108,350	+				-0.3
108,350	+				-2.0
108,350	+				-1.9
108,350	+				-3.5
108,358	-				-2.4
108,358	-				-2.0
108,358	-				-1.5
108,358	-				-1.4
108,360	+				-1.3
108,360	+				-1.7
108,360	+				-1.0
108,368	-				-3.0
108,368	-				-2.4
108,368	-				-1.9
108,479	+				+0.2
108,480	+				-2.6
108,488	-				+2.0
108,498	-				-1.9
108,527	+				-2.9
108,548	-				+1.3
108,564	+				+0.1
108,564	+				-0.6
108,564	+				-1.8
108,564	+				-0.7
108,567	-				-1.3
108,572	-				-1.5
108,572	-				-0.0
108,572	-				-0.6
108,572	-				-3.1
108,572	-				-0.4
108,575	+				-0.3
108,583	-				-1.0
108,583	-				-2.0
108,583	-				-0.7
108,583	-				-1.2
108,601	-				+0.1
108,616	-				-0.4
108,639	+				-1.5
108,639	+				-0.2
108,639	+				-3.0
108,639	+				+0.1
108,639	-				-1.4
108,641	-				-1.4
108,647	+				+0.7
108,647	-				-0.2
108,647	-				-0.9
108,647	-				-1.0
108,647	-				-0.7
108,647	-				-1.3
108,647	-				-0.0
108,654	-		PGA1_c01150	0.10	-1.1
108,654	-		PGA1_c01150	0.10	-0.1
108,655	-		PGA1_c01150	0.11	+0.7
108,655	-		PGA1_c01150	0.11	-0.4
108,662	+		PGA1_c01150	0.12	-0.1
108,662	-		PGA1_c01150	0.12	-1.2
108,662	-		PGA1_c01150	0.12	-1.8
108,678	-		PGA1_c01150	0.14	-0.9
108,689	+		PGA1_c01150	0.15	-0.7
108,689	+		PGA1_c01150	0.15	-0.4
108,726	-		PGA1_c01150	0.21	-1.3
108,759	+		PGA1_c01150	0.25	-0.5
108,759	+		PGA1_c01150	0.25	-2.1
108,767	-		PGA1_c01150	0.26	-1.0
108,767	-		PGA1_c01150	0.26	-0.9
108,767	-		PGA1_c01150	0.26	-1.3
108,767	-		PGA1_c01150	0.26	-1.3
108,825	-		PGA1_c01150	0.35	-0.4
108,842	+		PGA1_c01150	0.37	-0.0
108,842	+		PGA1_c01150	0.37	-2.0
108,850	-		PGA1_c01150	0.38	-1.4
108,853	+		PGA1_c01150	0.39	-0.3
108,853	+		PGA1_c01150	0.39	-0.8
108,853	+		PGA1_c01150	0.39	-0.6
108,861	-		PGA1_c01150	0.40	-1.4
108,864	-		PGA1_c01150	0.40	-1.8
108,871	-		PGA1_c01150	0.41	-1.3
108,906	-		PGA1_c01150	0.46	-0.4
108,906	-		PGA1_c01150	0.46	-0.1
108,921	-		PGA1_c01150	0.48	-0.7
109,032	+		PGA1_c01150	0.64	-0.4
109,032	+		PGA1_c01150	0.64	-1.5
109,032	+		PGA1_c01150	0.64	-0.5
109,032	+		PGA1_c01150	0.64	-0.3
109,040	-		PGA1_c01150	0.65	-0.7
109,040	-		PGA1_c01150	0.65	-1.0
109,040	-		PGA1_c01150	0.65	-0.3
109,048	-		PGA1_c01150	0.67	-1.2
109,049	-		PGA1_c01150	0.67	-1.1
109,090	+		PGA1_c01150	0.73	-1.6
109,124	-		PGA1_c01150	0.77	-2.4
109,124	-		PGA1_c01150	0.77	-3.3
109,148	+		PGA1_c01150	0.81	-1.4
109,153	+		PGA1_c01150	0.81	-1.6
109,153	+		PGA1_c01150	0.81	-1.5
109,153	+		PGA1_c01150	0.81	-1.1
109,153	+		PGA1_c01150	0.81	-0.5
109,153	+		PGA1_c01150	0.81	-1.7
109,153	+		PGA1_c01150	0.81	-1.4
109,153	+		PGA1_c01150	0.81	-2.6
109,153	+		PGA1_c01150	0.81	+0.4
109,153	+		PGA1_c01150	0.81	-1.4
109,153	+		PGA1_c01150	0.81	-1.9
109,153	+		PGA1_c01150	0.81	-2.2
109,153	+		PGA1_c01150	0.81	-0.6
109,156	-		PGA1_c01150	0.82	-0.3
109,156	-		PGA1_c01150	0.82	-0.4
109,161	-		PGA1_c01150	0.83	-2.1
109,161	-		PGA1_c01150	0.83	+0.0
109,161	-		PGA1_c01150	0.83	-0.9
109,161	-		PGA1_c01150	0.83	+0.1
109,161	-		PGA1_c01150	0.83	-0.8
109,161	-		PGA1_c01150	0.83	-0.7
109,161	-		PGA1_c01150	0.83	-0.8
109,161	-		PGA1_c01150	0.83	+0.4
109,161	-		PGA1_c01150	0.83	-1.8
109,161	-		PGA1_c01150	0.83	-1.3
109,161	-		PGA1_c01150	0.83	-0.7
109,161	-		PGA1_c01150	0.83	+0.0
109,161	-		PGA1_c01150	0.83	-0.5
109,161	-		PGA1_c01150	0.83	-0.7
109,166	-		PGA1_c01150	0.83	-1.9
109,166	-		PGA1_c01150	0.83	-1.1
109,173	+		PGA1_c01150	0.84	-1.9
109,194	-		PGA1_c01150	0.87	-1.7
109,256	+				-0.9
109,289	+				-0.6
109,291	-				-0.8
109,303	+				-0.2
109,343	-				-1.1
109,343	-				-2.5
109,361	+				+0.7
109,361	+				-0.6
109,380	-				-0.7
109,383	+				-1.6
109,401	+				-1.0
109,409	-				-1.6
109,409	-				-0.6
109,414	+				-0.3
109,466	+				-0.7
109,478	+				-0.3
109,479	+				-0.2
109,479	-				-1.1
109,483	+				-0.3
109,487	-				+1.4
109,498	+		PGA1_c01160	0.11	-0.1
109,498	+		PGA1_c01160	0.11	-0.3
109,553	-		PGA1_c01160	0.14	-1.0
109,553	-		PGA1_c01160	0.14	-1.0
109,593	+		PGA1_c01160	0.16	+0.3
109,701	+		PGA1_c01160	0.22	-0.7
109,704	-		PGA1_c01160	0.23	+0.2
109,709	-		PGA1_c01160	0.23	+1.7
109,709	-		PGA1_c01160	0.23	+0.3
109,734	-		PGA1_c01160	0.24	-0.6
109,747	+		PGA1_c01160	0.25	-0.4
109,747	+		PGA1_c01160	0.25	-1.7
109,747	+		PGA1_c01160	0.25	-1.7
109,747	+		PGA1_c01160	0.25	-1.6
109,747	+		PGA1_c01160	0.25	-0.5
109,747	+		PGA1_c01160	0.25	-0.7
109,747	+		PGA1_c01160	0.25	-0.8
109,747	+		PGA1_c01160	0.25	-0.3
109,747	+		PGA1_c01160	0.25	-0.5
109,747	+		PGA1_c01160	0.25	-2.6
109,747	+		PGA1_c01160	0.25	+0.7
109,755	-		PGA1_c01160	0.26	-0.9
109,755	-		PGA1_c01160	0.26	-0.9
109,755	-		PGA1_c01160	0.26	+0.7
109,755	-		PGA1_c01160	0.26	-0.6
109,755	-		PGA1_c01160	0.26	+0.3
109,755	-		PGA1_c01160	0.26	-0.9
109,755	-		PGA1_c01160	0.26	+0.7
109,755	-		PGA1_c01160	0.26	-0.7
109,755	-		PGA1_c01160	0.26	-1.1
109,775	-		PGA1_c01160	0.27	-1.2
109,821	-		PGA1_c01160	0.29	-0.8
109,842	-		PGA1_c01160	0.31	-0.7
109,879	+		PGA1_c01160	0.33	-0.6
109,880	-		PGA1_c01160	0.33	-0.9
109,922	-		PGA1_c01160	0.35	-0.3
109,927	+		PGA1_c01160	0.36	-1.4
110,020	+		PGA1_c01160	0.41	-1.0
110,036	+		PGA1_c01160	0.42	-0.5
110,039	-		PGA1_c01160	0.42	-0.3
110,041	+		PGA1_c01160	0.42	-0.9
110,041	+		PGA1_c01160	0.42	+0.1
110,103	+		PGA1_c01160	0.46	-0.9
110,132	+		PGA1_c01160	0.48	+0.2
110,138	+		PGA1_c01160	0.48	-0.6
110,140	-		PGA1_c01160	0.48	-0.1
110,141	-		PGA1_c01160	0.48	+0.5
110,144	+		PGA1_c01160	0.48	-0.2
110,152	-		PGA1_c01160	0.49	+1.1
110,177	+		PGA1_c01160	0.50	-2.4
110,200	+		PGA1_c01160	0.52	-0.8