Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03716

Experiment: PYE_noCalcium 30C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03714 and CCNA_03715 are separated by 8 nucleotidesCCNA_03715 and CCNA_03716 are separated by 58 nucleotidesCCNA_03716 and CCNA_03717 overlap by 34 nucleotidesCCNA_03717 and CCNA_R0090 are separated by 155 nucleotidesCCNA_R0090 and CCNA_03718 are separated by 169 nucleotides CCNA_03714: CCNA_03714 - ABC transporter ATP-binding protein, at 3,879,977 to 3,880,735 _03714 CCNA_03715: CCNA_03715 - OstA-like protein, at 3,880,744 to 3,881,304 _03715 CCNA_03716: CCNA_03716 - LptC-related lipopolysaccharide assembly protein, at 3,881,363 to 3,882,025 _03716 CCNA_03717: CCNA_03717 - ribonuclease D, at 3,881,992 to 3,882,609 _03717 CCNA_R0090: CCNA_R0090 - tRNA-Leu, at 3,882,765 to 3,882,851 _R0090 CCNA_03718: CCNA_03718 - NADH-ubiquinone oxidoreductase subunit, at 3,883,021 to 3,883,980 _03718 Position (kb) 3881 3882 3883Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3881.314 kb on + strandat 3881.343 kb on - strandat 3881.343 kb on - strandat 3881.361 kb on + strandat 3881.369 kb on - strandat 3881.378 kb on - strandat 3881.909 kb on - strand, within CCNA_03716at 3881.976 kb on + strandat 3881.989 kb on + strandat 3881.990 kb on + strandat 3881.998 kb on - strandat 3882.610 kb on + strandat 3882.611 kb on + strandat 3882.617 kb on - strandat 3882.618 kb on - strandat 3882.619 kb on - strandat 3882.672 kb on - strandat 3882.690 kb on - strandat 3882.764 kb on - strandat 3882.771 kb on - strandat 3882.967 kb on + strandat 3882.989 kb on - strandat 3883.001 kb on - strandat 3883.003 kb on - strandat 3883.013 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep3 12 days
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3,881,314 + -2.1
3,881,343 - +1.0
3,881,343 - -1.3
3,881,361 + +1.4
3,881,369 - -0.6
3,881,378 - -0.4
3,881,909 - CCNA_03716 0.82 -0.9
3,881,976 + -0.8
3,881,989 + -3.4
3,881,990 + -0.8
3,881,998 - +0.3
3,882,610 + +0.8
3,882,611 + +1.4
3,882,617 - -1.9
3,882,618 - -0.2
3,882,619 - -1.6
3,882,672 - -0.1
3,882,690 - +0.8
3,882,764 - +0.8
3,882,771 - +0.2
3,882,967 + -3.8
3,882,989 - -0.4
3,883,001 - +0.8
3,883,003 - -0.2
3,883,013 + +0.2

Or see this region's nucleotide sequence