Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03600

Experiment: PYE_noCalcium 30C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 30C survival rep3 12 days
3,753,123	-		CCNA_03599	0.20	-0.1
3,753,124	+		CCNA_03599	0.21	-1.0
3,753,139	+		CCNA_03599	0.22	+1.2
3,753,153	+		CCNA_03599	0.23	+1.0
3,753,153	+		CCNA_03599	0.23	+0.1
3,753,161	-		CCNA_03599	0.24	+0.7
3,753,161	-		CCNA_03599	0.24	-0.9
3,753,221	+		CCNA_03599	0.30	-0.8
3,753,235	+		CCNA_03599	0.31	-0.4
3,753,276	+		CCNA_03599	0.35	-0.8
3,753,278	+		CCNA_03599	0.35	+0.2
3,753,278	+		CCNA_03599	0.35	-0.4
3,753,278	+				+1.4
3,753,278	+		CCNA_03599	0.35	-0.7
3,753,278	+		CCNA_03599	0.35	-0.2
3,753,278	+		CCNA_03599	0.35	-0.5
3,753,278	+				-0.4
3,753,284	-		CCNA_03599	0.36	-0.7
3,753,286	-		CCNA_03599	0.36	-0.5
3,753,286	-				+0.1
3,753,288	+		CCNA_03599	0.36	+0.7
3,753,316	+		CCNA_03599	0.39	-1.0
3,753,351	-		CCNA_03599	0.42	-0.8
3,753,358	-		CCNA_03599	0.43	+0.1
3,753,368	+		CCNA_03599	0.44	-0.5
3,753,368	+		CCNA_03599	0.44	+0.0
3,753,368	+		CCNA_03599	0.44	+0.0
3,753,393	-		CCNA_03599	0.46	-0.6
3,753,426	+		CCNA_03599	0.49	+1.4
3,753,429	+		CCNA_03599	0.50	+1.1
3,753,446	-		CCNA_03599	0.51	-0.0
3,753,478	-				+2.8
3,753,478	-		CCNA_03599	0.54	-0.2
3,753,478	-		CCNA_03599	0.54	-1.1
3,753,480	+		CCNA_03599	0.55	+0.1
3,753,501	+		CCNA_03599	0.57	-0.8
3,753,528	-		CCNA_03599	0.59	-0.8
3,753,531	-		CCNA_03599	0.59	-1.1
3,753,541	+		CCNA_03599	0.60	-1.8
3,753,549	-		CCNA_03599	0.61	-0.1
3,753,557	+		CCNA_03599	0.62	-0.2
3,753,564	+		CCNA_03599	0.63	+0.2
3,753,570	-		CCNA_03599	0.63	-1.0
3,753,585	+		CCNA_03599	0.65	-0.2
3,753,600	+		CCNA_03599	0.66	-2.1
3,753,600	+		CCNA_03599	0.66	+0.0
3,753,608	-		CCNA_03599	0.67	-0.4
3,753,640	-		CCNA_03599	0.70	+0.4
3,753,708	+		CCNA_03599	0.76	+0.1
3,753,743	+		CCNA_03599	0.80	+1.2
3,753,751	-		CCNA_03599	0.80	-0.4
3,753,784	-		CCNA_03599	0.84	+0.6
3,753,820	-		CCNA_03599	0.87	-0.6
3,753,843	+		CCNA_03599	0.89	-0.1
3,753,857	+				+0.7
3,753,865	-				+2.2
3,753,867	+				-1.6
3,753,867	+				-0.4
3,753,875	-				+0.3
3,753,875	-				+0.6
3,753,875	-				-0.2
3,753,885	-				+0.1
3,753,898	+				+0.3
3,753,913	+				+1.1
3,753,921	-				+0.7
3,753,931	-				-1.2
3,753,957	-				-1.7
3,753,965	-				-1.0
3,754,005	+				+1.4
3,754,067	+				-0.6
3,754,088	+				+0.6
3,754,092	-				-0.2
3,754,103	-				+0.4
3,754,103	-				-1.2
3,754,105	+				-0.0
3,754,113	-				-1.0
3,754,113	-				-1.1
3,754,113	-				-0.5
3,754,113	-				-0.4
3,754,113	-				-1.2
3,754,113	-				-0.3
3,754,113	-				+0.2
3,754,179	+				-0.6
3,754,193	-				+0.5
3,754,198	-		CCNA_03600	0.10	+0.3
3,754,200	+		CCNA_03600	0.10	+0.4
3,754,208	-		CCNA_03600	0.11	+0.7
3,754,208	-		CCNA_03600	0.11	-0.3
3,754,213	-		CCNA_03600	0.12	+0.1
3,754,245	+		CCNA_03600	0.16	+0.4
3,754,253	-		CCNA_03600	0.17	+1.8
3,754,268	+		CCNA_03600	0.19	-0.2
3,754,318	+		CCNA_03600	0.26	+0.5
3,754,323	+		CCNA_03600	0.26	+0.6
3,754,326	-		CCNA_03600	0.27	-0.6
3,754,336	-		CCNA_03600	0.28	-0.5
3,754,338	+		CCNA_03600	0.28	+0.6
3,754,377	+		CCNA_03600	0.33	+0.9
3,754,380	-		CCNA_03600	0.34	-0.2
3,754,398	+		CCNA_03600	0.36	-0.5
3,754,445	+		CCNA_03600	0.42	+1.2
3,754,461	+		CCNA_03600	0.44	+1.7
3,754,469	-		CCNA_03600	0.45	+0.9
3,754,478	+		CCNA_03600	0.46	+0.2
3,754,478	+		CCNA_03600	0.46	-1.2
3,754,478	+		CCNA_03600	0.46	+0.3
3,754,486	-		CCNA_03600	0.47	+0.6
3,754,486	-		CCNA_03600	0.47	+1.8
3,754,510	-		CCNA_03600	0.51	-0.2
3,754,583	-		CCNA_03600	0.60	-0.5
3,754,596	+		CCNA_03600	0.62	+0.8
3,754,598	+		CCNA_03600	0.62	+0.4
3,754,606	-		CCNA_03600	0.63	-0.1
3,754,638	-		CCNA_03600	0.67	-0.2
3,754,681	-		CCNA_03600	0.73	+0.4
3,754,720	+		CCNA_03600	0.78	-0.2
3,754,760	-		CCNA_03600	0.83	+0.4
3,754,767	-		CCNA_03600	0.84	-0.1
3,754,785	+		CCNA_03600	0.86	+1.3
3,754,793	-		CCNA_03600	0.87	-0.1
3,754,827	-				+2.5
3,754,879	+				+1.3
3,754,879	+				-0.6
3,754,879	+				+1.3
3,754,879	+				+0.6
3,754,879	+				-0.3
3,754,879	+				+1.9
3,754,887	-				-1.1
3,754,887	-				-0.2
3,754,887	-				+1.8
3,754,887	-				-0.6
3,754,949	+				+0.4
3,754,949	+				+0.1
3,754,967	+				-0.4
3,754,969	+				+0.1
3,754,969	+				+0.6
3,755,042	+				+0.4
3,755,081	-		CCNA_03601	0.10	-0.4
3,755,120	+		CCNA_03601	0.16	-0.1
3,755,120	+		CCNA_03601	0.16	+0.5
3,755,120	+		CCNA_03601	0.16	+0.3
3,755,120	+		CCNA_03601	0.16	+0.1
3,755,120	+		CCNA_03601	0.16	+0.0
3,755,128	-		CCNA_03601	0.17	+0.0
3,755,128	-		CCNA_03601	0.17	-1.4
3,755,134	-		CCNA_03601	0.18	+0.1
3,755,181	+		CCNA_03601	0.25	+0.5
3,755,184	-		CCNA_03601	0.25	-0.4
3,755,206	+		CCNA_03601	0.28	+0.6
3,755,214	+		CCNA_03601	0.29	-0.5
3,755,214	+		CCNA_03601	0.29	+0.7
3,755,214	-		CCNA_03601	0.29	-1.0
3,755,227	-		CCNA_03601	0.31	+0.1
3,755,249	+		CCNA_03601	0.34	+0.4
3,755,249	+		CCNA_03601	0.34	-0.0
3,755,249	+		CCNA_03601	0.34	+1.3
3,755,257	-		CCNA_03601	0.35	+1.4
3,755,257	-		CCNA_03601	0.35	-0.1
3,755,257	-		CCNA_03601	0.35	+0.4
3,755,257	-		CCNA_03601	0.35	-0.4
3,755,290	-		CCNA_03601	0.40	-1.0
3,755,292	+		CCNA_03601	0.40	+0.3
3,755,292	+		CCNA_03601	0.40	-0.8
3,755,292	+		CCNA_03601	0.40	+0.4
3,755,292	+		CCNA_03601	0.40	+0.5
3,755,339	+		CCNA_03601	0.47	-0.8
3,755,348	+		CCNA_03601	0.48	+1.0
3,755,392	+		CCNA_03601	0.55	+0.0
3,755,392	+		CCNA_03601	0.55	-0.9
3,755,400	-		CCNA_03601	0.56	-0.2
3,755,400	-		CCNA_03601	0.56	-1.0
3,755,455	+		CCNA_03601	0.64	+0.6
3,755,455	+		CCNA_03601	0.64	+0.5
3,755,465	+		CCNA_03601	0.65	-0.1
3,755,465	+		CCNA_03601	0.65	-1.1
3,755,465	+		CCNA_03601	0.65	-0.1
3,755,465	+		CCNA_03601	0.65	-0.5
3,755,522	+		CCNA_03601	0.73	+0.2
3,755,522	+		CCNA_03601	0.73	+0.0
3,755,527	+		CCNA_03601	0.74	+0.7
3,755,527	+		CCNA_03601	0.74	+0.0
3,755,530	-		CCNA_03601	0.75	-0.4
3,755,535	-		CCNA_03601	0.75	-0.2
3,755,535	-		CCNA_03601	0.75	-1.5
3,755,654	+				+0.1
3,755,654	+				+0.2
3,755,657	-				-0.2
3,755,659	+				-0.1
3,755,662	+				+0.9
3,755,662	-				+1.4
3,755,667	-				-2.2
3,755,672	+				+1.0
3,755,677	+				+0.2
3,755,682	+				+0.2
3,755,687	+				-0.2
3,755,687	+				+0.4
3,755,687	+				+0.5
3,755,687	+				-0.3
3,755,695	-				-0.4
3,755,695	-				-0.2
3,755,695	-				-1.7
3,755,701	+				+0.5
3,755,709	-				+1.2
3,755,780	+				+0.8
3,755,841	+				-0.0
3,755,841	+				+0.3
3,755,842	-				-0.5
3,755,879	+		CCNA_03602	0.12	+0.3
3,755,879	+		CCNA_03602	0.12	+0.6