Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03416

Experiment: PYE_noCalcium 30C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 30C survival rep3 12 days
3,581,770	+		CCNA_03414	0.49	-0.6
3,581,796	+		CCNA_03414	0.51	-0.2
3,581,802	+		CCNA_03414	0.52	-2.1
3,581,810	-		CCNA_03414	0.52	-0.6
3,581,824	+		CCNA_03414	0.53	+0.4
3,581,824	+		CCNA_03414	0.53	-1.3
3,581,826	+		CCNA_03414	0.54	-0.2
3,581,845	-		CCNA_03414	0.55	-3.0
3,581,864	-		CCNA_03414	0.57	-3.1
3,581,899	+		CCNA_03414	0.60	-2.5
3,581,917	-		CCNA_03414	0.62	-3.4
3,581,939	+		CCNA_03414	0.64	-1.7
3,581,942	-		CCNA_03414	0.64	-2.7
3,581,966	-		CCNA_03414	0.66	-4.1
3,581,966	-		CCNA_03414	0.66	-3.0
3,581,966	-		CCNA_03414	0.66	-3.1
3,582,012	+		CCNA_03414	0.70	-4.2
3,582,018	+				+0.1
3,582,020	-		CCNA_03414	0.71	-3.2
3,582,026	-		CCNA_03414	0.71	+0.1
3,582,026	-		CCNA_03414	0.71	-4.3
3,582,026	-		CCNA_03414	0.71	-2.8
3,582,026	-		CCNA_03414	0.71	-2.1
3,582,026	-		CCNA_03414	0.71	-2.4
3,582,026	-		CCNA_03414	0.71	-4.0
3,582,026	-		CCNA_03414	0.71	-1.0
3,582,026	-		CCNA_03414	0.71	-2.6
3,582,042	+		CCNA_03414	0.73	-2.6
3,582,042	+		CCNA_03414	0.73	+1.4
3,582,050	-		CCNA_03414	0.73	-2.1
3,582,065	-		CCNA_03414	0.75	-1.8
3,582,120	-		CCNA_03414	0.79	-3.6
3,582,127	+		CCNA_03414	0.80	-1.1
3,582,167	-		CCNA_03414	0.83	-3.4
3,582,223	-		CCNA_03414	0.88	-1.5
3,582,239	-		CCNA_03414	0.90	+0.1
3,582,245	-				-3.6
3,582,255	-				-3.3
3,582,362	+				-1.6
3,582,362	+				-1.1
3,582,362	+				-1.8
3,582,362	+				-1.8
3,582,362	+				-1.7
3,582,362	+				-0.2
3,582,370	-				+0.3
3,582,370	-				+1.0
3,582,370	-				+0.2
3,582,490	+				-0.1
3,582,560	-		CCNA_03415	0.37	-3.3
3,582,560	-		CCNA_03415	0.37	-0.8
3,582,568	+		CCNA_03415	0.41	-0.6
3,582,581	-		CCNA_03415	0.46	-1.6
3,582,589	-		CCNA_03415	0.50	-1.1
3,582,589	-		CCNA_03415	0.50	+0.1
3,582,652	-		CCNA_03415	0.77	-1.4
3,582,713	-				+0.9
3,582,713	-				-0.2
3,582,754	-				+0.2
3,582,784	+				+2.4
3,582,791	-				-1.3
3,582,807	+				-1.7
3,582,840	+				+2.4
3,582,850	+				-0.6
3,582,855	+				+0.4
3,582,910	+		CCNA_03416	0.14	-0.2
3,582,928	-		CCNA_03416	0.16	-1.4
3,582,936	+		CCNA_03416	0.17	-2.3
3,582,944	-		CCNA_03416	0.18	-1.9
3,582,954	+		CCNA_03416	0.19	-1.0
3,582,962	-		CCNA_03416	0.19	-1.1
3,582,969	-		CCNA_03416	0.20	-0.4
3,583,036	-		CCNA_03416	0.27	-0.8
3,583,058	-		CCNA_03416	0.29	-0.9
3,583,058	-		CCNA_03416	0.29	-1.1
3,583,069	+		CCNA_03416	0.30	+1.0
3,583,096	+		CCNA_03416	0.33	+1.4
3,583,096	+		CCNA_03416	0.33	-0.5
3,583,096	-		CCNA_03416	0.33	-1.6
3,583,102	+		CCNA_03416	0.33	-1.1
3,583,112	-		CCNA_03416	0.34	-1.3
3,583,132	-		CCNA_03416	0.36	-1.3
3,583,148	+		CCNA_03416	0.38	+2.0
3,583,168	-		CCNA_03416	0.40	+0.1
3,583,170	+		CCNA_03416	0.40	-0.6
3,583,201	+		CCNA_03416	0.43	-1.5
3,583,209	-		CCNA_03416	0.44	-1.3
3,583,228	+		CCNA_03416	0.46	-1.2
3,583,236	-		CCNA_03416	0.47	-0.4
3,583,280	+		CCNA_03416	0.51	-1.9
3,583,288	-		CCNA_03416	0.52	-0.8
3,583,295	+		CCNA_03416	0.53	-0.3
3,583,295	+		CCNA_03416	0.53	-1.1
3,583,295	+		CCNA_03416	0.53	-2.1
3,583,295	+		CCNA_03416	0.53	-1.3
3,583,295	+		CCNA_03416	0.53	+0.1
3,583,295	+		CCNA_03416	0.53	-0.4
3,583,295	+		CCNA_03416	0.53	-1.4
3,583,303	-		CCNA_03416	0.53	-0.3
3,583,303	-		CCNA_03416	0.53	-0.5
3,583,303	-		CCNA_03416	0.53	-0.8
3,583,303	-		CCNA_03416	0.53	-1.2
3,583,312	+		CCNA_03416	0.54	-0.9
3,583,329	-		CCNA_03416	0.56	-2.0
3,583,346	-		CCNA_03416	0.58	-2.4
3,583,351	-		CCNA_03416	0.58	-2.6
3,583,357	+		CCNA_03416	0.59	-2.0
3,583,357	+		CCNA_03416	0.59	-3.1
3,583,365	-		CCNA_03416	0.60	-2.1
3,583,365	-		CCNA_03416	0.60	-0.4
3,583,376	-		CCNA_03416	0.61	-0.0
3,583,381	-		CCNA_03416	0.61	-1.8
3,583,402	-		CCNA_03416	0.63	-0.2
3,583,406	-		CCNA_03416	0.64	+0.4
3,583,409	+		CCNA_03416	0.64	-1.7
3,583,409	+		CCNA_03416	0.64	-1.6
3,583,409	+		CCNA_03416	0.64	-1.2
3,583,409	+		CCNA_03416	0.64	-1.6
3,583,417	-		CCNA_03416	0.65	-1.1
3,583,417	-		CCNA_03416	0.65	-0.4
3,583,417	-		CCNA_03416	0.65	-1.8
3,583,424	+		CCNA_03416	0.65	-1.2
3,583,479	+		CCNA_03416	0.71	-0.6
3,583,487	-		CCNA_03416	0.72	-2.5
3,583,498	-		CCNA_03416	0.73	-0.7
3,583,543	+		CCNA_03416	0.77	-0.8
3,583,543	+		CCNA_03416	0.77	-2.6
3,583,543	+		CCNA_03416	0.77	-1.2
3,583,543	+		CCNA_03416	0.77	-0.8
3,583,543	+		CCNA_03416	0.77	-1.1
3,583,543	+		CCNA_03416	0.77	-1.4
3,583,543	+		CCNA_03416	0.77	-1.5
3,583,551	-		CCNA_03416	0.78	-1.1
3,583,551	-		CCNA_03416	0.78	-0.2
3,583,551	-		CCNA_03416	0.78	-0.9
3,583,551	-		CCNA_03416	0.78	-1.0
3,583,551	-		CCNA_03416	0.78	-1.6
3,583,551	-		CCNA_03416	0.78	-0.9
3,583,551	-		CCNA_03416	0.78	-1.3
3,583,551	-		CCNA_03416	0.78	+0.8
3,583,600	+		CCNA_03416	0.83	-2.1
3,583,600	+		CCNA_03416	0.83	-1.2
3,583,600	+		CCNA_03416	0.83	-1.6
3,583,600	+		CCNA_03416	0.83	-2.4
3,583,608	-		CCNA_03416	0.84	-0.9
3,583,608	-		CCNA_03416	0.84	-1.2
3,583,608	-		CCNA_03416	0.84	-1.2
3,583,608	-		CCNA_03416	0.84	-3.4
3,583,608	-		CCNA_03416	0.84	-1.2
3,583,608	-		CCNA_03416	0.84	-1.5
3,583,608	-		CCNA_03416	0.84	+0.0
3,583,608	-		CCNA_03416	0.84	-1.0
3,583,608	-		CCNA_03416	0.84	-2.2
3,583,608	-		CCNA_03416	0.84	-0.5
3,583,608	-		CCNA_03416	0.84	-0.4
3,583,608	-		CCNA_03416	0.84	-3.9
3,583,610	+		CCNA_03416	0.84	-0.8
3,583,610	+		CCNA_03416	0.84	-1.1
3,583,610	+		CCNA_03416	0.84	-1.0
3,583,610	+		CCNA_03416	0.84	-0.2
3,583,612	+		CCNA_03416	0.84	-1.1
3,583,618	-		CCNA_03416	0.85	-0.7
3,583,618	-		CCNA_03416	0.85	-1.3
3,583,620	-		CCNA_03416	0.85	-3.1
3,583,643	+		CCNA_03416	0.87	-0.6
3,583,646	-		CCNA_03416	0.88	-0.7
3,583,648	+		CCNA_03416	0.88	-0.2
3,583,648	+		CCNA_03416	0.88	-1.9
3,583,651	-		CCNA_03416	0.88	+0.4
3,583,651	-		CCNA_03416	0.88	-0.8
3,583,651	-		CCNA_03416	0.88	+0.8
3,583,651	-		CCNA_03416	0.88	-1.4
3,583,656	-		CCNA_03416	0.89	-2.3
3,583,656	-		CCNA_03416	0.89	-0.7
3,583,656	-		CCNA_03416	0.89	+0.7
3,583,656	-		CCNA_03416	0.89	-0.2
3,583,742	-				+0.1
3,583,754	-				-0.9
3,583,848	-				-0.2
3,583,865	+				+1.1
3,583,878	+				-1.7
3,583,883	+				-0.9
3,583,883	+				-1.3
3,583,891	-				-0.9
3,583,899	+				-1.8
3,583,996	-		CCNA_03417	0.17	-0.7
3,584,001	-		CCNA_03417	0.17	-0.5
3,584,007	+		CCNA_03417	0.18	+0.3
3,584,007	+		CCNA_03417	0.18	+0.4
3,584,007	+		CCNA_03417	0.18	+1.3
3,584,012	+		CCNA_03417	0.19	+0.6
3,584,012	+		CCNA_03417	0.19	+0.2
3,584,012	+		CCNA_03417	0.19	-0.2
3,584,020	-		CCNA_03417	0.19	+0.8
3,584,020	-		CCNA_03417	0.19	-1.3
3,584,020	-		CCNA_03417	0.19	+0.0
3,584,020	-		CCNA_03417	0.19	-1.0
3,584,020	-		CCNA_03417	0.19	+0.9
3,584,020	-		CCNA_03417	0.19	-2.0
3,584,025	+		CCNA_03417	0.20	+0.4
3,584,091	-		CCNA_03417	0.27	-0.1
3,584,091	-		CCNA_03417	0.27	-1.8
3,584,102	+		CCNA_03417	0.28	+1.6
3,584,103	+		CCNA_03417	0.28	-1.8
3,584,110	-		CCNA_03417	0.29	-0.3
3,584,111	-		CCNA_03417	0.29	-1.8
3,584,116	-		CCNA_03417	0.30	+0.4
3,584,120	+		CCNA_03417	0.30	-1.4
3,584,154	+		CCNA_03417	0.34	-0.8
3,584,154	+		CCNA_03417	0.34	-0.6
3,584,187	+		CCNA_03417	0.37	-1.9
3,584,198	+		CCNA_03417	0.39	-0.9
3,584,198	+		CCNA_03417	0.39	+0.8
3,584,198	+		CCNA_03417	0.39	+0.1
3,584,201	-		CCNA_03417	0.39	+0.7
3,584,209	+		CCNA_03417	0.40	+1.2
3,584,217	-		CCNA_03417	0.41	-1.4
3,584,228	-		CCNA_03417	0.42	-0.3
3,584,244	+		CCNA_03417	0.44	+0.5
3,584,297	+		CCNA_03417	0.49	-0.8
3,584,297	+		CCNA_03417	0.49	-0.0
3,584,302	+		CCNA_03417	0.50	+0.8
3,584,302	+				+0.4
3,584,302	+		CCNA_03417	0.50	-0.9
3,584,310	-		CCNA_03417	0.51	-2.2
3,584,320	-		CCNA_03417	0.52	+0.2
3,584,337	+		CCNA_03417	0.54	+0.2
3,584,337	+		CCNA_03417	0.54	-0.6
3,584,345	-		CCNA_03417	0.55	-0.9
3,584,345	-		CCNA_03417	0.55	+1.0
3,584,345	-		CCNA_03417	0.55	-0.9
3,584,394	-		CCNA_03417	0.60	+0.1
3,584,400	+		CCNA_03417	0.60	+0.2
3,584,408	-		CCNA_03417	0.61	+0.3
3,584,425	-		CCNA_03417	0.63	-1.0
3,584,434	+		CCNA_03417	0.64	-0.6
3,584,444	+		CCNA_03417	0.65	-0.2
3,584,449	+		CCNA_03417	0.66	+0.6
3,584,454	+		CCNA_03417	0.66	+1.1
3,584,455	-		CCNA_03417	0.66	+0.1
3,584,514	+		CCNA_03417	0.73	+0.4
3,584,522	-		CCNA_03417	0.74	+0.6
3,584,603	-		CCNA_03417	0.82	-0.1
3,584,615	+		CCNA_03417	0.84	-0.1
3,584,615	+		CCNA_03417	0.84	+0.1
3,584,618	-		CCNA_03417	0.84	+1.1
3,584,623	-		CCNA_03417	0.85	-0.4
3,584,660	+		CCNA_03417	0.89	-0.6
3,584,668	-		CCNA_03417	0.90	-0.9
3,584,723	-				-0.4
3,584,723	-				+0.2
3,584,723	-				-0.6
3,584,766	+				-0.2
3,584,767	+				+1.7
3,584,768	-				+0.4