Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03280

Experiment: PYE_noCalcium 30C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 30C survival rep3 12 days
3,446,515	-		CCNA_03279	0.12	+0.5
3,446,519	+		CCNA_03279	0.13	+1.8
3,446,544	+		CCNA_03279	0.16	+2.4
3,446,552	-		CCNA_03279	0.17	+0.2
3,446,569	+		CCNA_03279	0.19	-0.8
3,446,572	-		CCNA_03279	0.19	-0.0
3,446,596	+		CCNA_03279	0.22	-0.2
3,446,691	-		CCNA_03279	0.33	-0.2
3,446,718	-		CCNA_03279	0.37	+0.5
3,446,745	-		CCNA_03279	0.40	-1.2
3,446,749	+		CCNA_03279	0.40	+0.8
3,446,757	-		CCNA_03279	0.41	+1.1
3,446,757	-		CCNA_03279	0.41	+0.2
3,446,786	+		CCNA_03279	0.45	-0.6
3,446,789	-		CCNA_03279	0.45	+0.5
3,446,831	-		CCNA_03279	0.50	+0.2
3,446,856	-		CCNA_03279	0.53	-1.3
3,446,867	+		CCNA_03279	0.54	-0.2
3,446,880	+		CCNA_03279	0.56	+0.6
3,446,880	+		CCNA_03279	0.56	+0.6
3,446,893	-		CCNA_03279	0.58	+0.4
3,446,899	+		CCNA_03279	0.58	+0.8
3,446,954	+		CCNA_03279	0.65	+0.9
3,447,065	-		CCNA_03279	0.78	+0.2
3,447,085	+		CCNA_03279	0.81	-0.3
3,447,086	-		CCNA_03279	0.81	+0.9
3,447,140	+		CCNA_03279	0.87	-1.2
3,447,148	-		CCNA_03279	0.88	+0.5
3,447,148	-		CCNA_03279	0.88	-0.2
3,447,213	+				-0.9
3,447,221	-				+0.7
3,447,278	+				-0.2
3,447,286	-				+0.4
3,447,303	-				+1.0
3,447,303	-				+0.5
3,447,313	+				+0.9
3,447,320	-				+0.2
3,447,321	-				+1.9
3,447,321	-				+0.9
3,447,321	-				+0.3
3,447,322	+				+0.1
3,447,323	+				+1.4
3,447,330	-				+0.3
3,447,332	-				+1.0
3,447,334	+				+0.6
3,447,342	-				+0.7
3,447,356	+				-0.8
3,447,356	+				-1.0
3,447,357	+				+0.9
3,447,357	+				+0.8
3,447,364	-				+0.1
3,447,366	-				+0.2
3,447,366	-				+1.1
3,447,368	+				+0.1
3,447,402	+				-1.2
3,447,410	-				+1.1
3,447,436	+				+1.4
3,447,443	-				+1.0
3,447,482	-				+1.4
3,447,482	-				+2.0
3,447,484	+				+0.2
3,447,484	+				-0.1
3,447,484	+				+0.0
3,447,484	+				-0.5
3,447,484	+				-0.4
3,447,484	+				+0.5
3,447,490	+				+1.1
3,447,492	-				+1.4
3,447,492	-				+1.0
3,447,492	-				+1.2
3,447,492	-				+1.1
3,447,492	-				+0.2
3,447,499	-				+0.4
3,447,502	-				+1.2
3,447,505	+				-1.9
3,447,513	-				+1.0
3,447,519	+				+0.0
3,447,519	+				-0.0
3,447,527	-				+1.4
3,447,527	-				+1.7
3,447,527	-				+1.2
3,447,547	-				-1.8
3,447,644	-				-2.9
3,447,728	+				-4.1
3,447,750	+				-3.5
3,447,750	+				-2.5
3,447,809	+				-3.6
3,447,858	+		CCNA_03280	0.10	-0.6
3,447,872	-		CCNA_03280	0.11	-2.5
3,447,887	-		CCNA_03280	0.11	-2.6
3,447,888	-		CCNA_03280	0.11	-3.8
3,447,918	+		CCNA_03280	0.12	-0.2
3,447,918	+		CCNA_03280	0.12	-1.2
3,447,926	-		CCNA_03280	0.12	-2.5
3,447,926	-		CCNA_03280	0.12	-3.4
3,447,954	-		CCNA_03280	0.13	-3.1
3,447,972	+		CCNA_03280	0.14	-2.4
3,447,992	+		CCNA_03280	0.14	-1.8
3,448,018	-		CCNA_03280	0.15	-3.4
3,448,028	+		CCNA_03280	0.15	-2.7
3,448,070	-		CCNA_03280	0.16	-2.0
3,448,070	-		CCNA_03280	0.16	-3.2
3,448,070	-		CCNA_03280	0.16	-3.1
3,448,095	+		CCNA_03280	0.17	+0.8
3,448,103	-		CCNA_03280	0.17	-3.2
3,448,103	-		CCNA_03280	0.17	-2.7
3,448,174	+		CCNA_03280	0.20	-2.5
3,448,174	+		CCNA_03280	0.20	-3.4
3,448,203	+		CCNA_03280	0.20	-1.8
3,448,213	+		CCNA_03280	0.21	-1.0
3,448,216	-		CCNA_03280	0.21	-3.1
3,448,221	-		CCNA_03280	0.21	-3.1
3,448,221	-		CCNA_03280	0.21	-3.1
3,448,286	-		CCNA_03280	0.23	-3.3
3,448,296	+		CCNA_03280	0.23	-1.4
3,448,327	-		CCNA_03280	0.24	-2.5
3,448,357	-		CCNA_03280	0.25	-3.1
3,448,378	-		CCNA_03280	0.25	-3.6
3,448,378	-		CCNA_03280	0.25	-2.5
3,448,395	-		CCNA_03280	0.26	-2.7
3,448,395	-		CCNA_03280	0.26	-3.0
3,448,402	-		CCNA_03280	0.26	-3.0
3,448,415	-		CCNA_03280	0.27	-2.8
3,448,415	-		CCNA_03280	0.27	-3.4
3,448,436	+		CCNA_03280	0.27	-2.3
3,448,466	-		CCNA_03280	0.28	-3.1
3,448,517	+		CCNA_03280	0.29	-4.1
3,448,534	+		CCNA_03280	0.30	-0.7
3,448,534	+		CCNA_03280	0.30	-0.6
3,448,534	-		CCNA_03280	0.30	-2.3
3,448,542	-		CCNA_03280	0.30	-2.3
3,448,566	-		CCNA_03280	0.31	-3.2
3,448,566	-		CCNA_03280	0.31	-3.1
3,448,576	+		CCNA_03280	0.31	-1.8
3,448,640	-		CCNA_03280	0.33	-3.4
3,448,643	+		CCNA_03280	0.33	-4.4
3,448,651	-		CCNA_03280	0.33	-2.8
3,448,661	+		CCNA_03280	0.34	+0.4
3,448,661	-		CCNA_03280	0.34	-3.5
3,448,750	+		CCNA_03280	0.36	-0.4
3,448,753	-		CCNA_03280	0.36	-2.4
3,448,758	-		CCNA_03280	0.36	-3.1
3,448,767	+		CCNA_03280	0.37	-1.2
3,448,768	-		CCNA_03280	0.37	-3.1
3,448,775	-		CCNA_03280	0.37	-3.1
3,448,851	+		CCNA_03280	0.39	-3.9
3,448,859	-		CCNA_03280	0.39	-2.0
3,448,876	+		CCNA_03280	0.40	-2.6
3,448,876	+		CCNA_03280	0.40	-1.9
3,448,884	-		CCNA_03280	0.40	-2.9
3,448,904	-		CCNA_03280	0.41	-3.8
3,448,916	+		CCNA_03280	0.41	+2.4
3,448,924	-		CCNA_03280	0.41	-3.6
3,448,950	-		CCNA_03280	0.42	-2.9
3,449,005	+		CCNA_03280	0.44	-3.0
3,449,005	+		CCNA_03280	0.44	-2.4
3,449,005	+		CCNA_03280	0.44	-1.6
3,449,033	+		CCNA_03280	0.44	-2.7
3,449,036	-		CCNA_03280	0.45	-3.4
3,449,059	+		CCNA_03280	0.45	-1.0
3,449,067	-		CCNA_03280	0.45	-4.0
3,449,072	-		CCNA_03280	0.46	-3.0
3,449,109	+		CCNA_03280	0.47	-1.7
3,449,117	-		CCNA_03280	0.47	-3.5
3,449,117	-		CCNA_03280	0.47	-2.9
3,449,122	-		CCNA_03280	0.47	-3.2
3,449,122	-		CCNA_03280	0.47	-2.4
3,449,122	-		CCNA_03280	0.47	-0.9
3,449,174	+		CCNA_03280	0.49	-0.2
3,449,174	+		CCNA_03280	0.49	+1.4
3,449,174	+		CCNA_03280	0.49	-2.8
3,449,182	-		CCNA_03280	0.49	-3.2
3,449,182	-		CCNA_03280	0.49	-3.1
3,449,182	-		CCNA_03280	0.49	-2.7
3,449,187	-		CCNA_03280	0.49	-4.3
3,449,187	-		CCNA_03280	0.49	+0.1
3,449,187	-		CCNA_03280	0.49	-2.8
3,449,204	+		CCNA_03280	0.49	-0.9
3,449,205	+		CCNA_03280	0.49	-1.1
3,449,234	-		CCNA_03280	0.50	-2.2
3,449,237	-		CCNA_03280	0.50	-3.4
3,449,308	+		CCNA_03280	0.52	-0.4
3,449,308	+				-0.2
3,449,366	-		CCNA_03280	0.54	-4.2
3,449,376	-		CCNA_03280	0.54	-3.3
3,449,391	+		CCNA_03280	0.55	+0.2
3,449,436	-		CCNA_03280	0.56	-3.3
3,449,457	-		CCNA_03280	0.57	-2.6
3,449,458	-		CCNA_03280	0.57	-2.8
3,449,480	-		CCNA_03280	0.57	-4.3
3,449,487	+		CCNA_03280	0.58	+1.4
3,449,498	+		CCNA_03280	0.58	-0.8
3,449,501	-		CCNA_03280	0.58	-2.2
3,449,506	-		CCNA_03280	0.58	-3.8
3,449,511	-		CCNA_03280	0.58	-2.5
3,449,657	-		CCNA_03280	0.63	-2.5
3,449,662	-		CCNA_03280	0.63	-1.6
3,449,702	-		CCNA_03280	0.64	-3.4
3,449,713	-		CCNA_03280	0.64	-3.4
3,449,713	-		CCNA_03280	0.64	-2.7
3,449,714	+		CCNA_03280	0.64	-1.7
3,449,715	+		CCNA_03280	0.64	-1.7
3,449,717	-		CCNA_03280	0.64	-3.5
3,449,722	-		CCNA_03280	0.64	-2.9
3,449,723	-		CCNA_03280	0.65	-3.9
3,449,723	-		CCNA_03280	0.65	-3.6
3,449,728	-		CCNA_03280	0.65	-3.8
3,449,747	-		CCNA_03280	0.65	-3.0
3,449,747	-		CCNA_03280	0.65	-2.4
3,449,765	-		CCNA_03280	0.66	-2.7
3,449,792	+		CCNA_03280	0.67	-1.8
3,449,860	-		CCNA_03280	0.68	-2.3
3,449,892	+		CCNA_03280	0.69	-0.6
3,449,895	-		CCNA_03280	0.70	-2.9
3,449,922	+		CCNA_03280	0.70	-2.2
3,449,984	-		CCNA_03280	0.72	-3.0
3,449,991	+		CCNA_03280	0.72	-0.8
3,450,008	+		CCNA_03280	0.73	-2.4
3,450,013	+		CCNA_03280	0.73	-1.2
3,450,014	-				+0.1
3,450,016	-		CCNA_03280	0.73	-3.3
3,450,021	-		CCNA_03280	0.73	-4.9
3,450,021	-		CCNA_03280	0.73	-3.2
3,450,021	-		CCNA_03280	0.73	-3.1
3,450,032	+		CCNA_03280	0.73	-1.4
3,450,033	+		CCNA_03280	0.74	-1.6
3,450,033	-		CCNA_03280	0.74	-2.9
3,450,039	-		CCNA_03280	0.74	-2.8
3,450,040	-		CCNA_03280	0.74	-4.0
3,450,041	-		CCNA_03280	0.74	-2.6
3,450,041	-		CCNA_03280	0.74	-3.3
3,450,041	-		CCNA_03280	0.74	-3.9
3,450,044	-		CCNA_03280	0.74	-2.9
3,450,068	+		CCNA_03280	0.75	-2.9
3,450,075	+		CCNA_03280	0.75	-1.2
3,450,093	+		CCNA_03280	0.75	-3.0
3,450,103	-		CCNA_03280	0.76	-3.7
3,450,114	+		CCNA_03280	0.76	-4.0
3,450,122	-		CCNA_03280	0.76	-2.3
3,450,122	-		CCNA_03280	0.76	-2.3
3,450,122	-		CCNA_03280	0.76	-1.8
3,450,131	+		CCNA_03280	0.76	-2.3
3,450,139	-		CCNA_03280	0.77	-4.0
3,450,170	+		CCNA_03280	0.78	-0.8
3,450,170	+		CCNA_03280	0.78	-0.0
3,450,178	-		CCNA_03280	0.78	-3.1
3,450,178	-		CCNA_03280	0.78	-3.3
3,450,178	-		CCNA_03280	0.78	-3.5
3,450,178	-		CCNA_03280	0.78	-4.3
3,450,249	-		CCNA_03280	0.80	-2.9
3,450,249	-		CCNA_03280	0.80	-2.4
3,450,256	+		CCNA_03280	0.80	-0.2
3,450,318	+		CCNA_03280	0.82	+0.1
3,450,322	+		CCNA_03280	0.82	-1.0
3,450,326	-		CCNA_03280	0.82	-1.2
3,450,326	-		CCNA_03280	0.82	-2.1
3,450,330	+		CCNA_03280	0.82	-1.9
3,450,330	+		CCNA_03280	0.82	+0.4
3,450,338	-		CCNA_03280	0.82	-2.4
3,450,338	-		CCNA_03280	0.82	-3.0
3,450,338	-		CCNA_03280	0.82	-2.8
3,450,338	-		CCNA_03280	0.82	-4.0
3,450,338	-		CCNA_03280	0.82	-2.8
3,450,352	-		CCNA_03280	0.83	-2.8
3,450,353	-		CCNA_03280	0.83	-2.8
3,450,363	+		CCNA_03280	0.83	-1.8
3,450,371	-		CCNA_03280	0.83	-3.2
3,450,409	+		CCNA_03280	0.84	-1.7
3,450,411	+		CCNA_03280	0.85	-1.0
3,450,459	-		CCNA_03280	0.86	-2.5
3,450,482	+		CCNA_03280	0.87	-1.0
3,450,491	-		CCNA_03280	0.87	-3.6
3,450,491	-		CCNA_03280	0.87	-1.8
3,450,491	-		CCNA_03280	0.87	-4.5
3,450,518	+		CCNA_03280	0.88	+0.1
3,450,570	-		CCNA_03280	0.89	-2.6
3,450,622	+				-0.8
3,450,634	-				-3.5
3,450,647	-				-2.5
3,450,656	-				-3.1
3,450,670	+				-0.8
3,450,671	-				-3.3
3,450,703	-				-3.5
3,450,703	-				-3.3
3,450,725	-				-2.9
3,450,737	-				-2.4
3,450,738	+				-0.4
3,450,760	+				+0.8
3,450,791	+				-2.0
3,450,820	-				-3.6
3,450,845	+				-3.1
3,450,853	-				-3.8
3,450,863	-				-2.5
3,450,981	+				-0.4
3,450,988	-				+2.4
3,450,988	-				+0.9
3,450,988	-				-0.1
3,451,002	+				+1.3
3,451,141	+		CCNA_03281	0.11	+1.7
3,451,146	+		CCNA_03281	0.12	+1.4
3,451,151	+		CCNA_03281	0.13	+1.5
3,451,162	+		CCNA_03281	0.15	+1.6
3,451,166	+		CCNA_03281	0.16	+1.4
3,451,173	+		CCNA_03281	0.17	+1.1
3,451,173	+		CCNA_03281	0.17	+1.8
3,451,174	+		CCNA_03281	0.18	+1.6
3,451,179	+		CCNA_03281	0.19	-4.9
3,451,192	+		CCNA_03281	0.21	+0.8
3,451,231	+		CCNA_03281	0.29	+1.7
3,451,254	+		CCNA_03281	0.34	+1.1
3,451,270	+		CCNA_03281	0.37	+1.6
3,451,282	+		CCNA_03281	0.39	+1.4
3,451,282	+		CCNA_03281	0.39	+1.6
3,451,282	+		CCNA_03281	0.39	+1.6
3,451,290	+		CCNA_03281	0.41	+1.7
3,451,292	+		CCNA_03281	0.41	+1.3
3,451,292	+		CCNA_03281	0.41	+1.5
3,451,300	+		CCNA_03281	0.43	+1.8
3,451,331	+		CCNA_03281	0.49	+1.6
3,451,338	-		CCNA_03281	0.51	+0.8
3,451,339	+		CCNA_03281	0.51	+1.4
3,451,339	+		CCNA_03281	0.51	+1.4
3,451,371	+		CCNA_03281	0.57	-0.3
3,451,441	+		CCNA_03281	0.71	+1.4
3,451,441	+		CCNA_03281	0.71	+1.6
3,451,521	+		CCNA_03281	0.87	+1.3
3,451,529	+		CCNA_03281	0.89	+1.3
3,451,529	+		CCNA_03281	0.89	+1.4
3,451,553	+				-0.4
3,451,553	+				-0.7
3,451,558	+				-0.6
3,451,585	-				+0.4
3,451,620	-				-2.0
3,451,651	-				-0.2
3,451,684	+				-2.1
3,451,684	+				+0.6
3,451,692	-				-0.1
3,451,692	-				-0.9
3,451,754	+				+0.4
3,451,771	+				+1.8
3,451,771	+				-1.5
3,451,776	+				-0.5
3,451,779	-				-0.6
3,451,779	-				+0.8
3,451,779	-				+0.5
3,451,846	+				-0.8
3,451,867	+				-1.0
3,451,882	+				-0.6
3,451,882	+				-0.8
3,451,903	-		CCNA_03282	0.12	-1.8
3,451,903	-		CCNA_03282	0.12	+1.4
3,451,915	+		CCNA_03282	0.13	-0.1
3,451,937	-				+0.8