Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03243

Experiment: PYE_noCalcium 30C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 30C survival rep3 12 days
3,407,740	+		CCNA_03242	0.33	+0.8
3,407,748	-		CCNA_03242	0.33	+0.1
3,407,758	-		CCNA_03242	0.34	-0.2
3,407,773	+		CCNA_03242	0.35	-1.2
3,407,820	-		CCNA_03242	0.38	-1.4
3,407,830	-		CCNA_03242	0.39	-0.3
3,407,835	-		CCNA_03242	0.39	-0.8
3,407,863	-		CCNA_03242	0.41	-0.4
3,407,863	-		CCNA_03242	0.41	-0.7
3,407,868	-		CCNA_03242	0.41	-1.0
3,407,924	-		CCNA_03242	0.45	+1.0
3,407,966	-		CCNA_03242	0.48	+0.5
3,407,977	-		CCNA_03242	0.49	-2.9
3,407,982	+		CCNA_03242	0.49	+0.4
3,407,990	-		CCNA_03242	0.50	-0.8
3,408,026	-		CCNA_03242	0.52	-0.8
3,408,026	-		CCNA_03242	0.52	-0.1
3,408,029	+		CCNA_03242	0.52	-1.2
3,408,069	-		CCNA_03242	0.55	+0.1
3,408,069	-		CCNA_03242	0.55	-1.6
3,408,087	+		CCNA_03242	0.56	-1.6
3,408,149	+		CCNA_03242	0.61	-1.0
3,408,185	+		CCNA_03242	0.63	-1.5
3,408,185	+		CCNA_03242	0.63	+0.1
3,408,185	+		CCNA_03242	0.63	+0.1
3,408,190	+		CCNA_03242	0.63	-0.8
3,408,195	+		CCNA_03242	0.64	+0.8
3,408,198	-		CCNA_03242	0.64	-2.5
3,408,203	-		CCNA_03242	0.64	+0.8
3,408,219	-		CCNA_03242	0.65	-0.3
3,408,222	+		CCNA_03242	0.66	-1.0
3,408,228	+		CCNA_03242	0.66	+2.1
3,408,280	+		CCNA_03242	0.70	-1.0
3,408,299	+		CCNA_03242	0.71	-0.4
3,408,343	+		CCNA_03242	0.74	-0.3
3,408,353	+		CCNA_03242	0.75	-1.2
3,408,363	+		CCNA_03242	0.75	-1.5
3,408,430	+		CCNA_03242	0.80	-1.6
3,408,433	-		CCNA_03242	0.80	-1.1
3,408,433	-		CCNA_03242	0.80	+3.0
3,408,435	+		CCNA_03242	0.80	+1.0
3,408,443	-		CCNA_03242	0.81	+1.2
3,408,446	-		CCNA_03242	0.81	-1.0
3,408,451	-		CCNA_03242	0.81	-0.9
3,408,453	-		CCNA_03242	0.81	-0.0
3,408,478	+		CCNA_03242	0.83	-1.8
3,408,478	+		CCNA_03242	0.83	-1.3
3,408,486	-		CCNA_03242	0.84	+0.4
3,408,486	-		CCNA_03242	0.84	-2.0
3,408,501	+		CCNA_03242	0.85	+0.4
3,408,516	+		CCNA_03242	0.86	-1.5
3,408,524	-		CCNA_03242	0.86	-0.0
3,408,533	+		CCNA_03242	0.87	-0.2
3,408,538	+		CCNA_03242	0.87	-0.5
3,408,538	+		CCNA_03242	0.87	+0.0
3,408,538	+		CCNA_03242	0.87	+0.1
3,408,538	+		CCNA_03242	0.87	-0.2
3,408,538	+		CCNA_03242	0.87	-1.2
3,408,546	-		CCNA_03242	0.88	+0.0
3,408,546	-		CCNA_03242	0.88	-0.0
3,408,546	-		CCNA_03242	0.88	-0.6
3,408,637	-				-0.5
3,408,639	+				+0.4
3,408,639	+				+2.4
3,408,647	-				-1.1
3,408,647	-				+0.7
3,408,647	-				-1.3
3,408,647	-				+0.1
3,408,655	+				+1.2
3,408,663	+				+1.8
3,408,669	-				-0.0
3,408,676	+				-0.2
3,408,700	+				+2.4
3,408,700	+				+0.1
3,408,700	+				-0.8
3,408,700	+				+0.8
3,408,700	+				+1.4
3,408,707	-				-1.3
3,408,707	-				+2.4
3,408,708	-				-1.4
3,408,708	-				-0.5
3,408,718	-				+0.9
3,408,723	+				+1.4
3,408,723	+				-1.4
3,408,723	+				+1.4
3,408,731	-				+0.1
3,408,731	-				+0.7
3,408,742	+				-0.4
3,408,744	+				-0.2
3,408,762	-				+1.4
3,408,762	-				+2.0
3,408,762	-				+1.6
3,408,770	+				+2.7
3,408,770	+				-1.1
3,408,776	-				+1.5
3,408,797	-				+0.2
3,408,811	+				-1.9
3,408,811	+				-0.5
3,408,811	+				+0.2
3,408,829	-				-1.5
3,408,861	-				-1.7
3,408,861	-				+0.5
3,408,888	+		CCNA_03243	0.11	+0.2
3,408,888	+		CCNA_03243	0.11	-0.4
3,408,896	-		CCNA_03243	0.12	+0.2
3,408,896	-		CCNA_03243	0.12	+2.4
3,408,896	-		CCNA_03243	0.12	-0.3
3,408,896	-		CCNA_03243	0.12	-1.8
3,408,910	+		CCNA_03243	0.13	+0.4
3,408,915	+		CCNA_03243	0.13	+0.8
3,408,923	-		CCNA_03243	0.14	+2.0
3,408,933	+		CCNA_03243	0.14	-0.2
3,408,933	+		CCNA_03243	0.14	-1.9
3,408,933	+		CCNA_03243	0.14	-0.8
3,408,941	-		CCNA_03243	0.15	-0.8
3,408,941	-		CCNA_03243	0.15	+0.8
3,408,941	-		CCNA_03243	0.15	+0.8
3,408,942	-		CCNA_03243	0.15	-0.0
3,408,946	+		CCNA_03243	0.15	+0.4
3,408,992	-		CCNA_03243	0.18	+2.6
3,408,998	+		CCNA_03243	0.19	-0.7
3,409,005	+		CCNA_03243	0.19	+0.8
3,409,005	+		CCNA_03243	0.19	-0.4
3,409,021	-		CCNA_03243	0.20	-0.7
3,409,029	+		CCNA_03243	0.21	+0.4
3,409,029	+		CCNA_03243	0.21	+0.1
3,409,029	+		CCNA_03243	0.21	-0.6
3,409,037	-		CCNA_03243	0.21	+0.8
3,409,037	-		CCNA_03243	0.21	-0.2
3,409,039	+		CCNA_03243	0.21	+0.8
3,409,047	-		CCNA_03243	0.22	+0.4
3,409,047	-		CCNA_03243	0.22	+0.9
3,409,078	+		CCNA_03243	0.24	-1.7
3,409,097	+		CCNA_03243	0.25	-1.5
3,409,097	+		CCNA_03243	0.25	+1.4
3,409,097	+		CCNA_03243	0.25	-0.6
3,409,097	+		CCNA_03243	0.25	+2.0
3,409,097	+		CCNA_03243	0.25	-0.2
3,409,097	+		CCNA_03243	0.25	+1.0
3,409,105	-		CCNA_03243	0.26	-0.2
3,409,105	-		CCNA_03243	0.26	+0.3
3,409,139	-		CCNA_03243	0.28	-0.1
3,409,167	+		CCNA_03243	0.30	-0.3
3,409,189	+		CCNA_03243	0.31	+1.4
3,409,197	-		CCNA_03243	0.32	-0.6
3,409,197	-		CCNA_03243	0.32	-0.9
3,409,197	-		CCNA_03243	0.32	-0.5
3,409,197	-		CCNA_03243	0.32	-1.8
3,409,226	+		CCNA_03243	0.34	-0.2
3,409,236	-		CCNA_03243	0.34	-0.8
3,409,242	-		CCNA_03243	0.35	+0.6
3,409,308	+		CCNA_03243	0.39	+1.4
3,409,309	+		CCNA_03243	0.39	+0.8
3,409,333	-		CCNA_03243	0.41	+1.1
3,409,350	+		CCNA_03243	0.42	+2.4
3,409,373	-		CCNA_03243	0.44	-0.2
3,409,378	-		CCNA_03243	0.44	-0.8
3,409,378	-		CCNA_03243	0.44	-1.0
3,409,378	-		CCNA_03243	0.44	+0.6
3,409,384	+		CCNA_03243	0.44	+0.8
3,409,423	-		CCNA_03243	0.47	+0.4
3,409,423	-		CCNA_03243	0.47	-0.1
3,409,423	-		CCNA_03243	0.47	-0.0
3,409,424	-		CCNA_03243	0.47	-0.0
3,409,437	-		CCNA_03243	0.48	+0.8
3,409,465	-		CCNA_03243	0.50	-0.9
3,409,483	+		CCNA_03243	0.51	+2.4
3,409,486	-		CCNA_03243	0.51	+1.5
3,409,491	-		CCNA_03243	0.51	+0.3
3,409,521	+		CCNA_03243	0.53	-1.5
3,409,526	+		CCNA_03243	0.54	-0.2
3,409,550	+		CCNA_03243	0.55	-0.0
3,409,619	-		CCNA_03243	0.60	-0.4
3,409,652	+		CCNA_03243	0.62	-0.9
3,409,671	-		CCNA_03243	0.63	-0.1
3,409,678	+		CCNA_03243	0.64	+0.6
3,409,692	-		CCNA_03243	0.65	-0.7
3,409,704	-		CCNA_03243	0.66	+0.2
3,409,704	-		CCNA_03243	0.66	+0.0
3,409,709	-		CCNA_03243	0.66	-0.7
3,409,748	+		CCNA_03243	0.69	+0.2
3,409,748	+		CCNA_03243	0.69	-1.0
3,409,759	+		CCNA_03243	0.69	-0.4
3,409,765	-		CCNA_03243	0.70	+0.1
3,409,794	-		CCNA_03243	0.72	-0.3
3,409,798	+		CCNA_03243	0.72	-0.6
3,409,798	+		CCNA_03243	0.72	-0.6
3,409,798	+		CCNA_03243	0.72	-0.4
3,409,856	+		CCNA_03243	0.76	+1.4
3,409,878	+		CCNA_03243	0.77	+1.3
3,409,892	+		CCNA_03243	0.78	+0.4
3,409,900	+		CCNA_03243	0.79	-1.4
3,409,908	-		CCNA_03243	0.79	-0.4
3,409,908	-		CCNA_03243	0.79	-0.4
3,409,953	+		CCNA_03243	0.82	+0.1
3,409,961	-		CCNA_03243	0.83	+0.7
3,409,963	+		CCNA_03243	0.83	-0.9
3,410,059	+		CCNA_03243	0.89	+0.4
3,410,067	-		CCNA_03243	0.90	+1.0
3,410,107	-				+0.4
3,410,107	-				-1.5
3,410,111	-				-0.4
3,410,133	-				+0.3
3,410,150	+				+0.4
3,410,163	-				+1.0
3,410,173	-				-0.2
3,410,181	+				+0.3
3,410,192	+				+0.5
3,410,204	+				+0.4
3,410,205	+				+0.8
3,410,214	+				+0.1
3,410,222	-				+1.2
3,410,261	+				-0.8
3,410,261	+				+0.3
3,410,316	-				-2.6
3,410,365	+		CCNA_03244	0.13	+2.5
3,410,374	-		CCNA_03244	0.15	+2.8
3,410,428	+		CCNA_03244	0.23	+1.0
3,410,463	+		CCNA_03244	0.28	+3.0
3,410,525	-		CCNA_03244	0.37	+4.0
3,410,558	+		CCNA_03244	0.42	+3.2
3,410,566	-		CCNA_03244	0.43	+2.5
3,410,599	+		CCNA_03244	0.48	+0.9
3,410,599	+		CCNA_03244	0.48	+2.6
3,410,600	+		CCNA_03244	0.48	+1.3
3,410,600	+		CCNA_03244	0.48	+3.0
3,410,600	+		CCNA_03244	0.48	+4.7
3,410,600	+		CCNA_03244	0.48	+2.6
3,410,600	+		CCNA_03244	0.48	+2.1
3,410,607	-		CCNA_03244	0.49	+2.9
3,410,608	-		CCNA_03244	0.50	+2.2
3,410,655	+		CCNA_03244	0.57	+1.1
3,410,655	+		CCNA_03244	0.57	+2.1
3,410,663	-		CCNA_03244	0.58	+2.9
3,410,663	-		CCNA_03244	0.58	+2.1
3,410,663	-		CCNA_03244	0.58	+1.6
3,410,666	+		CCNA_03244	0.58	+1.4
3,410,666	+		CCNA_03244	0.58	+0.2
3,410,666	+		CCNA_03244	0.58	+2.6
3,410,666	+		CCNA_03244	0.58	+1.5
3,410,666	+		CCNA_03244	0.58	+3.0
3,410,666	+		CCNA_03244	0.58	+2.6
3,410,666	+		CCNA_03244	0.58	+2.8
3,410,666	+		CCNA_03244	0.58	+2.0
3,410,666	+		CCNA_03244	0.58	+3.8
3,410,666	+		CCNA_03244	0.58	+2.2
3,410,666	+		CCNA_03244	0.58	+0.8
3,410,666	+		CCNA_03244	0.58	+1.6
3,410,666	+		CCNA_03244	0.58	+0.1
3,410,674	-		CCNA_03244	0.59	+2.7
3,410,674	-		CCNA_03244	0.59	+3.0
3,410,674	-		CCNA_03244	0.59	+2.9
3,410,674	-		CCNA_03244	0.59	+3.4
3,410,674	-		CCNA_03244	0.59	+3.1
3,410,674	-		CCNA_03244	0.59	+2.7
3,410,674	-		CCNA_03244	0.59	+3.8
3,410,681	+		CCNA_03244	0.60	+2.1
3,410,681	+		CCNA_03244	0.60	+0.9
3,410,699	-		CCNA_03244	0.63	+2.0
3,410,749	-		CCNA_03244	0.71	+3.2
3,410,763	-		CCNA_03244	0.73	+3.0
3,410,848	+		CCNA_03244	0.85	+0.4
3,410,857	+		CCNA_03244	0.87	+2.1
3,410,869	+		CCNA_03244	0.88	+2.0
3,410,912	+				+2.0
3,410,912	+				-1.3
3,410,920	-				+0.3
3,410,947	-				-1.4
3,411,020	+				+1.0
3,411,028	-				-0.8
3,411,064	-				-0.8
3,411,107	+				-1.0
3,411,131	+				-2.5
3,411,141	+				-1.0
3,411,141	+				+0.2
3,411,141	+				-1.1
3,411,149	-		CCNA_03245	0.10	-1.2
3,411,149	-		CCNA_03245	0.10	-2.9
3,411,156	+		CCNA_03245	0.11	-3.2
3,411,164	-		CCNA_03245	0.11	-0.4
3,411,164	-		CCNA_03245	0.11	-0.7
3,411,174	+		CCNA_03245	0.12	+1.4
3,411,174	+		CCNA_03245	0.12	-0.0
3,411,174	+		CCNA_03245	0.12	-0.4
3,411,176	+		CCNA_03245	0.12	+0.4