Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00437

Experiment: PYE_noCalcium 30C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00436 and CCNA_00437 are separated by 198 nucleotidesCCNA_00437 and CCNA_00438 are separated by 211 nucleotidesCCNA_00438 and CCNA_00439 are separated by 296 nucleotides CCNA_00436: CCNA_00436 - acyl-CoA dehydrogenase, short-chain specific, at 441,717 to 442,865 _00436 CCNA_00437: CCNA_00437 - methyl-accepting chemotaxis protein, at 443,064 to 444,677 _00437 CCNA_00438: CCNA_00438 - hypothetical protein, at 444,889 to 445,200 _00438 CCNA_00439: CCNA_00439 - methyl-accepting chemotaxis protein, at 445,497 to 447,518 _00439 Position (kb) 443 444 445Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 442.076 kb on - strand, within CCNA_00436at 442.104 kb on + strand, within CCNA_00436at 442.112 kb on - strand, within CCNA_00436at 442.122 kb on + strand, within CCNA_00436at 442.137 kb on + strand, within CCNA_00436at 442.153 kb on + strand, within CCNA_00436at 442.158 kb on + strand, within CCNA_00436at 442.158 kb on + strand, within CCNA_00436at 442.168 kb on + strand, within CCNA_00436at 442.215 kb on + strand, within CCNA_00436at 442.216 kb on - strand, within CCNA_00436at 442.216 kb on - strand, within CCNA_00436at 442.256 kb on + strand, within CCNA_00436at 442.265 kb on - strand, within CCNA_00436at 442.267 kb on + strand, within CCNA_00436at 442.301 kb on + strand, within CCNA_00436at 442.323 kb on + strand, within CCNA_00436at 442.331 kb on - strand, within CCNA_00436at 442.340 kb on + strand, within CCNA_00436at 442.340 kb on + strand, within CCNA_00436at 442.389 kb on - strand, within CCNA_00436at 442.408 kb on + strand, within CCNA_00436at 442.408 kb on - strand, within CCNA_00436at 442.422 kb on + strand, within CCNA_00436at 442.428 kb on + strand, within CCNA_00436at 442.455 kb on + strand, within CCNA_00436at 442.470 kb on + strand, within CCNA_00436at 442.476 kb on + strand, within CCNA_00436at 442.488 kb on + strand, within CCNA_00436at 442.503 kb on + strand, within CCNA_00436at 442.554 kb on - strand, within CCNA_00436at 442.577 kb on + strand, within CCNA_00436at 442.613 kb on + strand, within CCNA_00436at 442.619 kb on - strand, within CCNA_00436at 442.669 kb on + strand, within CCNA_00436at 442.669 kb on + strand, within CCNA_00436at 442.669 kb on + strand, within CCNA_00436at 442.677 kb on - strand, within CCNA_00436at 442.677 kb on - strand, within CCNA_00436at 442.677 kb on - strand, within CCNA_00436at 442.712 kb on - strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strandat 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.727 kb on - strand, within CCNA_00436at 442.727 kb on - strand, within CCNA_00436at 442.727 kb on - strand, within CCNA_00436at 442.759 kb on + strandat 442.780 kb on - strandat 442.782 kb on - strandat 442.816 kb on + strandat 442.866 kb on + strandat 442.866 kb on + strandat 442.874 kb on - strandat 442.876 kb on + strandat 442.936 kb on + strandat 442.962 kb on - strandat 442.971 kb on - strandat 443.032 kb on - strandat 443.038 kb on - strandat 443.087 kb on - strandat 443.169 kb on - strandat 443.169 kb on - strandat 443.180 kb on + strandat 443.210 kb on + strandat 443.218 kb on - strandat 443.218 kb on - strandat 443.257 kb on - strand, within CCNA_00437at 443.305 kb on + strand, within CCNA_00437at 443.310 kb on + strand, within CCNA_00437at 443.310 kb on + strand, within CCNA_00437at 443.315 kb on + strand, within CCNA_00437at 443.315 kb on + strand, within CCNA_00437at 443.315 kb on + strand, within CCNA_00437at 443.318 kb on - strand, within CCNA_00437at 443.334 kb on - strand, within CCNA_00437at 443.348 kb on - strand, within CCNA_00437at 443.352 kb on + strand, within CCNA_00437at 443.360 kb on - strand, within CCNA_00437at 443.366 kb on - strand, within CCNA_00437at 443.367 kb on - strand, within CCNA_00437at 443.374 kb on + strand, within CCNA_00437at 443.374 kb on + strand, within CCNA_00437at 443.382 kb on - strand, within CCNA_00437at 443.382 kb on - strand, within CCNA_00437at 443.382 kb on - strand, within CCNA_00437at 443.382 kb on - strand, within CCNA_00437at 443.382 kb on - strand, within CCNA_00437at 443.426 kb on + strand, within CCNA_00437at 443.451 kb on - strand, within CCNA_00437at 443.453 kb on + strand, within CCNA_00437at 443.456 kb on - strand, within CCNA_00437at 443.461 kb on - strand, within CCNA_00437at 443.461 kb on - strand, within CCNA_00437at 443.468 kb on + strand, within CCNA_00437at 443.476 kb on - strand, within CCNA_00437at 443.487 kb on - strand, within CCNA_00437at 443.487 kb on - strand, within CCNA_00437at 443.493 kb on + strand, within CCNA_00437at 443.521 kb on - strand, within CCNA_00437at 443.540 kb on - strand, within CCNA_00437at 443.565 kb on + strand, within CCNA_00437at 443.588 kb on + strand, within CCNA_00437at 443.594 kb on - strand, within CCNA_00437at 443.596 kb on - strand, within CCNA_00437at 443.619 kb on + strand, within CCNA_00437at 443.627 kb on - strand, within CCNA_00437at 443.631 kb on + strand, within CCNA_00437at 443.632 kb on + strand, within CCNA_00437at 443.638 kb on - strand, within CCNA_00437at 443.648 kb on - strand, within CCNA_00437at 443.652 kb on + strand, within CCNA_00437at 443.660 kb on - strand, within CCNA_00437at 443.660 kb on - strand, within CCNA_00437at 443.702 kb on + strand, within CCNA_00437at 443.715 kb on + strand, within CCNA_00437at 443.723 kb on + strand, within CCNA_00437at 443.731 kb on - strand, within CCNA_00437at 443.731 kb on - strand, within CCNA_00437at 443.731 kb on - strand, within CCNA_00437at 443.734 kb on + strand, within CCNA_00437at 443.741 kb on - strandat 443.741 kb on - strand, within CCNA_00437at 443.814 kb on + strand, within CCNA_00437at 443.814 kb on + strand, within CCNA_00437at 443.814 kb on + strand, within CCNA_00437at 443.814 kb on + strand, within CCNA_00437at 443.827 kb on - strand, within CCNA_00437at 443.832 kb on + strand, within CCNA_00437at 443.864 kb on - strand, within CCNA_00437at 443.872 kb on + strand, within CCNA_00437at 443.880 kb on - strand, within CCNA_00437at 443.910 kb on - strand, within CCNA_00437at 443.924 kb on - strand, within CCNA_00437at 443.966 kb on + strand, within CCNA_00437at 443.980 kb on - strand, within CCNA_00437at 443.980 kb on - strand, within CCNA_00437at 444.031 kb on - strand, within CCNA_00437at 444.037 kb on - strand, within CCNA_00437at 444.069 kb on - strand, within CCNA_00437at 444.095 kb on - strand, within CCNA_00437at 444.097 kb on + strand, within CCNA_00437at 444.119 kb on + strand, within CCNA_00437at 444.127 kb on - strand, within CCNA_00437at 444.127 kb on - strand, within CCNA_00437at 444.138 kb on + strand, within CCNA_00437at 444.143 kb on + strand, within CCNA_00437at 444.168 kb on + strand, within CCNA_00437at 444.169 kb on + strand, within CCNA_00437at 444.218 kb on + strand, within CCNA_00437at 444.218 kb on - strand, within CCNA_00437at 444.226 kb on - strand, within CCNA_00437at 444.230 kb on + strand, within CCNA_00437at 444.238 kb on - strand, within CCNA_00437at 444.238 kb on - strand, within CCNA_00437at 444.238 kb on - strand, within CCNA_00437at 444.251 kb on + strand, within CCNA_00437at 444.264 kb on - strand, within CCNA_00437at 444.296 kb on + strand, within CCNA_00437at 444.368 kb on - strand, within CCNA_00437at 444.376 kb on - strand, within CCNA_00437at 444.376 kb on - strand, within CCNA_00437at 444.380 kb on + strand, within CCNA_00437at 444.383 kb on - strand, within CCNA_00437at 444.387 kb on + strand, within CCNA_00437at 444.388 kb on - strand, within CCNA_00437at 444.388 kb on - strand, within CCNA_00437at 444.411 kb on + strand, within CCNA_00437at 444.419 kb on - strand, within CCNA_00437at 444.420 kb on + strand, within CCNA_00437at 444.420 kb on + strand, within CCNA_00437at 444.420 kb on + strand, within CCNA_00437at 444.428 kb on - strand, within CCNA_00437at 444.494 kb on + strand, within CCNA_00437at 444.503 kb on + strand, within CCNA_00437at 444.511 kb on - strand, within CCNA_00437at 444.513 kb on + strand, within CCNA_00437at 444.520 kb on + strandat 444.530 kb on - strandat 444.541 kb on - strandat 444.686 kb on + strandat 444.694 kb on - strandat 444.708 kb on - strandat 444.708 kb on - strandat 444.710 kb on - strandat 444.715 kb on + strandat 444.723 kb on - strandat 444.723 kb on - strandat 444.738 kb on + strandat 444.758 kb on + strandat 444.758 kb on + strandat 444.758 kb on + strandat 444.766 kb on + strandat 444.766 kb on - strandat 444.827 kb on - strandat 444.827 kb on - strandat 444.832 kb on - strandat 444.848 kb on - strandat 444.857 kb on - strandat 444.858 kb on - strandat 444.985 kb on + strand, within CCNA_00438at 445.006 kb on + strand, within CCNA_00438at 445.006 kb on + strand, within CCNA_00438at 445.013 kb on + strand, within CCNA_00438at 445.014 kb on - strand, within CCNA_00438at 445.021 kb on - strand, within CCNA_00438at 445.051 kb on - strand, within CCNA_00438at 445.055 kb on + strand, within CCNA_00438at 445.055 kb on + strand, within CCNA_00438at 445.063 kb on - strand, within CCNA_00438at 445.063 kb on - strand, within CCNA_00438at 445.083 kb on - strand, within CCNA_00438at 445.092 kb on + strand, within CCNA_00438at 445.108 kb on - strand, within CCNA_00438at 445.116 kb on - strand, within CCNA_00438at 445.141 kb on + strand, within CCNA_00438at 445.202 kb on - strandat 445.202 kb on - strandat 445.359 kb on - strandat 445.376 kb on - strandat 445.378 kb on + strandat 445.491 kb on + strandat 445.499 kb on - strandat 445.499 kb on - strandat 445.519 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.567 kb on + strandat 445.575 kb on - strandat 445.599 kb on - strandat 445.611 kb on + strandat 445.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep3 12 days
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442,076 - CCNA_00436 0.31 -0.1
442,104 + CCNA_00436 0.34 -0.2
442,112 - CCNA_00436 0.34 -0.0
442,122 + CCNA_00436 0.35 -0.7
442,137 + CCNA_00436 0.37 -1.8
442,153 + CCNA_00436 0.38 -1.5
442,158 + CCNA_00436 0.38 +0.5
442,158 + CCNA_00436 0.38 -0.4
442,168 + CCNA_00436 0.39 -1.4
442,215 + CCNA_00436 0.43 +0.0
442,216 - CCNA_00436 0.43 -1.4
442,216 - CCNA_00436 0.43 -1.2
442,256 + CCNA_00436 0.47 +0.9
442,265 - CCNA_00436 0.48 -2.0
442,267 + CCNA_00436 0.48 -1.2
442,301 + CCNA_00436 0.51 +0.3
442,323 + CCNA_00436 0.53 -0.1
442,331 - CCNA_00436 0.53 +2.0
442,340 + CCNA_00436 0.54 +0.2
442,340 + CCNA_00436 0.54 +1.3
442,389 - CCNA_00436 0.58 -2.2
442,408 + CCNA_00436 0.60 -1.1
442,408 - CCNA_00436 0.60 +0.0
442,422 + CCNA_00436 0.61 -0.2
442,428 + CCNA_00436 0.62 +0.5
442,455 + CCNA_00436 0.64 -1.4
442,470 + CCNA_00436 0.66 +0.2
442,476 + CCNA_00436 0.66 -0.7
442,488 + CCNA_00436 0.67 +2.1
442,503 + CCNA_00436 0.68 +0.2
442,554 - CCNA_00436 0.73 +0.2
442,577 + CCNA_00436 0.75 -0.3
442,613 + CCNA_00436 0.78 -0.1
442,619 - CCNA_00436 0.79 +1.5
442,669 + CCNA_00436 0.83 -1.1
442,669 + CCNA_00436 0.83 -2.0
442,669 + CCNA_00436 0.83 +1.0
442,677 - CCNA_00436 0.84 -1.2
442,677 - CCNA_00436 0.84 -1.6
442,677 - CCNA_00436 0.84 +0.1
442,712 - CCNA_00436 0.87 -0.5
442,719 + CCNA_00436 0.87 +1.1
442,719 + CCNA_00436 0.87 -0.2
442,719 + CCNA_00436 0.87 +1.0
442,719 + CCNA_00436 0.87 -3.0
442,719 + +2.4
442,719 + CCNA_00436 0.87 +0.2
442,719 + CCNA_00436 0.87 -1.6
442,719 + CCNA_00436 0.87 -0.2
442,727 - CCNA_00436 0.88 -1.2
442,727 - CCNA_00436 0.88 -1.0
442,727 - CCNA_00436 0.88 -0.4
442,759 + -0.6
442,780 - -1.6
442,782 - +3.9
442,816 + +1.1
442,866 + +0.6
442,866 + +0.5
442,874 - -1.1
442,876 + -0.7
442,936 + +1.6
442,962 - -0.2
442,971 - +0.9
443,032 - -0.6
443,038 - -0.3
443,087 - +1.4
443,169 - -1.6
443,169 - -0.1
443,180 + -3.0
443,210 + +0.5
443,218 - +0.4
443,218 - -0.8
443,257 - CCNA_00437 0.12 +0.4
443,305 + CCNA_00437 0.15 -1.5
443,310 + CCNA_00437 0.15 +1.0
443,310 + CCNA_00437 0.15 +0.6
443,315 + CCNA_00437 0.16 +0.7
443,315 + CCNA_00437 0.16 -2.7
443,315 + CCNA_00437 0.16 -0.1
443,318 - CCNA_00437 0.16 +1.4
443,334 - CCNA_00437 0.17 -0.5
443,348 - CCNA_00437 0.18 -1.5
443,352 + CCNA_00437 0.18 -0.2
443,360 - CCNA_00437 0.18 -1.3
443,366 - CCNA_00437 0.19 -1.7
443,367 - CCNA_00437 0.19 -2.2
443,374 + CCNA_00437 0.19 -1.6
443,374 + CCNA_00437 0.19 -0.8
443,382 - CCNA_00437 0.20 -1.4
443,382 - CCNA_00437 0.20 +0.4
443,382 - CCNA_00437 0.20 -0.3
443,382 - CCNA_00437 0.20 +1.7
443,382 - CCNA_00437 0.20 -0.8
443,426 + CCNA_00437 0.22 +0.4
443,451 - CCNA_00437 0.24 -1.2
443,453 + CCNA_00437 0.24 -1.1
443,456 - CCNA_00437 0.24 +2.4
443,461 - CCNA_00437 0.25 -1.0
443,461 - CCNA_00437 0.25 -0.8
443,468 + CCNA_00437 0.25 +0.0
443,476 - CCNA_00437 0.26 +1.4
443,487 - CCNA_00437 0.26 +1.4
443,487 - CCNA_00437 0.26 +0.0
443,493 + CCNA_00437 0.27 -2.0
443,521 - CCNA_00437 0.28 -0.4
443,540 - CCNA_00437 0.29 +0.4
443,565 + CCNA_00437 0.31 +0.6
443,588 + CCNA_00437 0.32 +1.8
443,594 - CCNA_00437 0.33 -0.8
443,596 - CCNA_00437 0.33 -0.2
443,619 + CCNA_00437 0.34 +0.4
443,627 - CCNA_00437 0.35 -0.2
443,631 + CCNA_00437 0.35 -1.1
443,632 + CCNA_00437 0.35 +0.8
443,638 - CCNA_00437 0.36 -0.4
443,648 - CCNA_00437 0.36 +2.4
443,652 + CCNA_00437 0.36 +0.6
443,660 - CCNA_00437 0.37 +0.5
443,660 - CCNA_00437 0.37 +0.8
443,702 + CCNA_00437 0.40 -0.8
443,715 + CCNA_00437 0.40 -0.6
443,723 + CCNA_00437 0.41 -1.1
443,731 - CCNA_00437 0.41 -0.0
443,731 - CCNA_00437 0.41 +1.4
443,731 - CCNA_00437 0.41 -0.4
443,734 + CCNA_00437 0.42 -0.2
443,741 - +0.4
443,741 - CCNA_00437 0.42 -0.2
443,814 + CCNA_00437 0.46 +0.0
443,814 + CCNA_00437 0.46 +0.6
443,814 + CCNA_00437 0.46 -1.4
443,814 + CCNA_00437 0.46 +0.7
443,827 - CCNA_00437 0.47 -0.8
443,832 + CCNA_00437 0.48 +0.6
443,864 - CCNA_00437 0.50 -0.1
443,872 + CCNA_00437 0.50 +0.4
443,880 - CCNA_00437 0.51 +0.0
443,910 - CCNA_00437 0.52 +0.4
443,924 - CCNA_00437 0.53 +0.5
443,966 + CCNA_00437 0.56 +0.2
443,980 - CCNA_00437 0.57 -0.3
443,980 - CCNA_00437 0.57 +0.1
444,031 - CCNA_00437 0.60 +0.1
444,037 - CCNA_00437 0.60 -1.9
444,069 - CCNA_00437 0.62 +0.8
444,095 - CCNA_00437 0.64 -0.4
444,097 + CCNA_00437 0.64 -1.2
444,119 + CCNA_00437 0.65 -1.3
444,127 - CCNA_00437 0.66 -0.6
444,127 - CCNA_00437 0.66 -0.6
444,138 + CCNA_00437 0.67 +0.6
444,143 + CCNA_00437 0.67 -1.3
444,168 + CCNA_00437 0.68 +0.8
444,169 + CCNA_00437 0.68 +0.5
444,218 + CCNA_00437 0.71 -1.0
444,218 - CCNA_00437 0.71 +1.4
444,226 - CCNA_00437 0.72 +0.4
444,230 + CCNA_00437 0.72 -1.5
444,238 - CCNA_00437 0.73 -1.3
444,238 - CCNA_00437 0.73 -0.2
444,238 - CCNA_00437 0.73 +0.4
444,251 + CCNA_00437 0.74 +1.8
444,264 - CCNA_00437 0.74 -0.5
444,296 + CCNA_00437 0.76 -0.3
444,368 - CCNA_00437 0.81 +2.4
444,376 - CCNA_00437 0.81 -1.1
444,376 - CCNA_00437 0.81 -0.2
444,380 + CCNA_00437 0.82 -0.6
444,383 - CCNA_00437 0.82 -0.6
444,387 + CCNA_00437 0.82 +1.1
444,388 - CCNA_00437 0.82 +1.5
444,388 - CCNA_00437 0.82 +0.9
444,411 + CCNA_00437 0.83 +0.1
444,419 - CCNA_00437 0.84 +1.0
444,420 + CCNA_00437 0.84 -0.8
444,420 + CCNA_00437 0.84 -2.0
444,420 + CCNA_00437 0.84 -0.6
444,428 - CCNA_00437 0.85 +1.4
444,494 + CCNA_00437 0.89 -1.2
444,503 + CCNA_00437 0.89 -1.8
444,511 - CCNA_00437 0.90 -1.4
444,513 + CCNA_00437 0.90 +0.2
444,520 + -1.6
444,530 - -1.4
444,541 - +0.4
444,686 + +0.2
444,694 - +0.6
444,708 - -0.2
444,708 - +1.2
444,710 - -1.5
444,715 + -0.0
444,723 - -0.7
444,723 - +0.1
444,738 + +0.7
444,758 + -0.4
444,758 + -0.4
444,758 + +1.0
444,766 + +1.5
444,766 - -1.1
444,827 - -0.6
444,827 - -0.2
444,832 - +0.8
444,848 - +1.5
444,857 - +0.5
444,858 - +0.8
444,985 + CCNA_00438 0.31 +0.8
445,006 + CCNA_00438 0.38 -0.4
445,006 + CCNA_00438 0.38 +0.0
445,013 + CCNA_00438 0.40 -0.6
445,014 - CCNA_00438 0.40 +0.9
445,021 - CCNA_00438 0.42 +1.1
445,051 - CCNA_00438 0.52 +0.9
445,055 + CCNA_00438 0.53 +0.4
445,055 + CCNA_00438 0.53 +1.8
445,063 - CCNA_00438 0.56 +0.5
445,063 - CCNA_00438 0.56 +1.6
445,083 - CCNA_00438 0.62 +0.9
445,092 + CCNA_00438 0.65 -0.4
445,108 - CCNA_00438 0.70 +0.9
445,116 - CCNA_00438 0.73 +0.7
445,141 + CCNA_00438 0.81 +2.4
445,202 - +0.6
445,202 - +0.6
445,359 - -0.1
445,376 - -1.0
445,378 + -0.5
445,491 + -0.5
445,499 - -0.2
445,499 - -1.0
445,519 + +0.4
445,526 + +0.3
445,526 + +0.1
445,526 + +0.2
445,526 + +0.7
445,526 + +0.5
445,534 - -0.6
445,534 - +1.7
445,534 - -1.0
445,534 - -1.1
445,534 - +0.0
445,567 + +0.8
445,575 - +1.8
445,599 - +0.8
445,611 + +0.8
445,650 + +0.8

Or see this region's nucleotide sequence