Experiment: PYE_noCalcium 30C survival rep3 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03919 and CCNA_00423 are separated by 233 nucleotides CCNA_00423 and CCNA_00424 are separated by 246 nucleotides CCNA_00424 and CCNA_00425 are separated by 72 nucleotides CCNA_00425 and CCNA_00426 are separated by 450 nucleotides
CCNA_03919: CCNA_03919 - hypothetical protein, at 433,090 to 433,170
_03919
CCNA_00423: CCNA_00423 - phosphohydrolase, MutT-nudix family, at 433,404 to 433,874
_00423
CCNA_00424: CCNA_00424 - aldehyde dehydrogenase, at 434,121 to 435,560
_00424
CCNA_00425: CCNA_00425 - hypothetical protein, at 435,633 to 436,094
_00425
CCNA_00426: CCNA_00426 - very-short-patch-repair endonuclease, at 436,545 to 436,889
_00426
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.124 kb on - strand, within CCNA_03919 at 433.125 kb on - strand, within CCNA_03919 at 433.136 kb on + strand, within CCNA_03919 at 433.136 kb on + strand, within CCNA_03919 at 433.144 kb on - strand, within CCNA_03919 at 433.144 kb on - strand, within CCNA_03919 at 433.148 kb on - strand, within CCNA_03919 at 433.172 kb on + strand at 433.205 kb on - strand at 433.233 kb on - strand at 433.245 kb on + strand at 433.253 kb on - strand at 433.264 kb on + strand at 433.268 kb on - strand at 433.268 kb on - strand at 433.304 kb on + strand at 433.306 kb on + strand at 433.306 kb on + strand at 433.306 kb on + strand at 433.306 kb on + strand at 433.306 kb on + strand at 433.319 kb on + strand at 433.338 kb on + strand at 433.338 kb on + strand at 433.338 kb on + strand at 433.338 kb on + strand at 433.346 kb on - strand at 433.346 kb on - strand at 433.378 kb on + strand at 433.390 kb on + strand at 433.390 kb on + strand at 433.397 kb on - strand at 433.406 kb on + strand at 433.406 kb on + strand at 433.414 kb on - strand at 433.445 kb on + strand at 433.445 kb on + strand at 433.452 kb on + strand, within CCNA_00423 at 433.453 kb on - strand, within CCNA_00423 at 433.453 kb on - strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.474 kb on + strand, within CCNA_00423 at 433.482 kb on - strand, within CCNA_00423 at 433.514 kb on + strand, within CCNA_00423 at 433.514 kb on + strand, within CCNA_00423 at 433.522 kb on - strand, within CCNA_00423 at 433.538 kb on + strand, within CCNA_00423 at 433.541 kb on - strand, within CCNA_00423 at 433.546 kb on - strand, within CCNA_00423 at 433.552 kb on - strand, within CCNA_00423 at 433.559 kb on - strand, within CCNA_00423 at 433.560 kb on - strand, within CCNA_00423 at 433.668 kb on + strand, within CCNA_00423 at 433.683 kb on + strand, within CCNA_00423 at 433.696 kb on - strand, within CCNA_00423 at 433.707 kb on + strand, within CCNA_00423 at 433.707 kb on + strand, within CCNA_00423 at 433.741 kb on + strand, within CCNA_00423 at 433.749 kb on - strand, within CCNA_00423 at 433.815 kb on - strand, within CCNA_00423 at 433.839 kb on + strand at 433.844 kb on + strand at 433.846 kb on + strand at 433.851 kb on + strand at 433.851 kb on + strand at 433.855 kb on + strand at 433.859 kb on - strand at 433.863 kb on - strand at 433.870 kb on + strand at 433.873 kb on - strand at 433.875 kb on + strand at 433.878 kb on + strand at 433.899 kb on - strand at 433.915 kb on - strand at 433.925 kb on - strand at 433.926 kb on + strand at 433.949 kb on + strand at 433.949 kb on + strand at 433.949 kb on + strand at 433.949 kb on + strand at 433.949 kb on + strand at 433.949 kb on + strand at 433.957 kb on - strand at 433.957 kb on - strand at 433.957 kb on - strand at 433.957 kb on - strand at 433.957 kb on - strand at 433.957 kb on - strand at 433.965 kb on - strand at 433.965 kb on - strand at 433.965 kb on - strand at 433.996 kb on + strand at 433.997 kb on - strand at 434.033 kb on + strand at 434.041 kb on - strand at 434.041 kb on - strand at 434.041 kb on - strand at 434.060 kb on + strand at 434.105 kb on + strand at 434.105 kb on + strand at 434.105 kb on + strand at 434.105 kb on + strand at 434.105 kb on + strand at 434.113 kb on - strand at 434.113 kb on - strand at 434.113 kb on - strand at 434.128 kb on + strand at 434.138 kb on + strand at 434.146 kb on - strand at 434.206 kb on + strand at 434.213 kb on + strand at 434.213 kb on + strand at 434.247 kb on + strand at 434.258 kb on + strand at 434.260 kb on - strand at 434.282 kb on - strand, within CCNA_00424 at 434.288 kb on - strand, within CCNA_00424 at 434.296 kb on + strand, within CCNA_00424 at 434.303 kb on - strand, within CCNA_00424 at 434.305 kb on + strand, within CCNA_00424 at 434.305 kb on + strand, within CCNA_00424 at 434.305 kb on + strand, within CCNA_00424 at 434.357 kb on - strand, within CCNA_00424 at 434.372 kb on + strand, within CCNA_00424 at 434.372 kb on + strand, within CCNA_00424 at 434.372 kb on + strand, within CCNA_00424 at 434.372 kb on + strand, within CCNA_00424 at 434.372 kb on + strand, within CCNA_00424 at 434.386 kb on - strand, within CCNA_00424 at 434.410 kb on + strand, within CCNA_00424 at 434.410 kb on + strand, within CCNA_00424 at 434.434 kb on + strand, within CCNA_00424 at 434.446 kb on + strand, within CCNA_00424 at 434.451 kb on + strand, within CCNA_00424 at 434.451 kb on + strand, within CCNA_00424 at 434.451 kb on + strand, within CCNA_00424 at 434.454 kb on - strand, within CCNA_00424 at 434.454 kb on - strand, within CCNA_00424 at 434.458 kb on - strand, within CCNA_00424 at 434.459 kb on - strand, within CCNA_00424 at 434.471 kb on + strand, within CCNA_00424 at 434.523 kb on + strand, within CCNA_00424 at 434.549 kb on - strand, within CCNA_00424 at 434.553 kb on + strand, within CCNA_00424 at 434.561 kb on - strand, within CCNA_00424 at 434.622 kb on + strand, within CCNA_00424 at 434.624 kb on + strand, within CCNA_00424 at 434.624 kb on + strand, within CCNA_00424 at 434.624 kb on + strand, within CCNA_00424 at 434.631 kb on + strand, within CCNA_00424 at 434.632 kb on - strand, within CCNA_00424 at 434.691 kb on - strand at 434.713 kb on - strand, within CCNA_00424 at 434.714 kb on + strand, within CCNA_00424 at 434.722 kb on - strand, within CCNA_00424 at 434.795 kb on - strand, within CCNA_00424 at 434.803 kb on + strand, within CCNA_00424 at 434.814 kb on + strand, within CCNA_00424 at 434.847 kb on + strand, within CCNA_00424 at 434.848 kb on + strand, within CCNA_00424 at 434.848 kb on + strand, within CCNA_00424 at 434.853 kb on + strand, within CCNA_00424 at 434.856 kb on - strand, within CCNA_00424 at 434.870 kb on + strand, within CCNA_00424 at 434.871 kb on + strand, within CCNA_00424 at 434.878 kb on - strand, within CCNA_00424 at 434.932 kb on - strand, within CCNA_00424 at 434.941 kb on + strand, within CCNA_00424 at 434.941 kb on + strand, within CCNA_00424 at 434.946 kb on + strand, within CCNA_00424 at 434.949 kb on - strand, within CCNA_00424 at 434.954 kb on - strand, within CCNA_00424 at 434.959 kb on - strand, within CCNA_00424 at 434.974 kb on + strand, within CCNA_00424 at 434.978 kb on + strand, within CCNA_00424 at 434.986 kb on - strand, within CCNA_00424 at 434.986 kb on - strand, within CCNA_00424 at 435.022 kb on - strand, within CCNA_00424 at 435.091 kb on - strand, within CCNA_00424 at 435.098 kb on - strand, within CCNA_00424 at 435.104 kb on + strand, within CCNA_00424 at 435.125 kb on + strand, within CCNA_00424 at 435.127 kb on + strand, within CCNA_00424 at 435.139 kb on + strand, within CCNA_00424 at 435.147 kb on - strand, within CCNA_00424 at 435.152 kb on - strand, within CCNA_00424 at 435.157 kb on - strand, within CCNA_00424 at 435.157 kb on - strand, within CCNA_00424 at 435.170 kb on + strand, within CCNA_00424 at 435.185 kb on - strand, within CCNA_00424 at 435.185 kb on - strand, within CCNA_00424 at 435.185 kb on - strand, within CCNA_00424 at 435.188 kb on + strand, within CCNA_00424 at 435.188 kb on + strand, within CCNA_00424 at 435.196 kb on + strand, within CCNA_00424 at 435.196 kb on + strand, within CCNA_00424 at 435.276 kb on + strand, within CCNA_00424 at 435.276 kb on + strand, within CCNA_00424 at 435.276 kb on + strand, within CCNA_00424 at 435.276 kb on + strand, within CCNA_00424 at 435.294 kb on - strand, within CCNA_00424 at 435.327 kb on + strand, within CCNA_00424 at 435.328 kb on - strand, within CCNA_00424 at 435.336 kb on - strand, within CCNA_00424 at 435.341 kb on + strand, within CCNA_00424 at 435.360 kb on + strand, within CCNA_00424 at 435.372 kb on + strand, within CCNA_00424 at 435.372 kb on + strand, within CCNA_00424 at 435.382 kb on - strand, within CCNA_00424 at 435.410 kb on - strand, within CCNA_00424 at 435.435 kb on - strand at 435.555 kb on + strand at 435.584 kb on + strand at 435.592 kb on - strand at 435.594 kb on + strand at 435.594 kb on + strand at 435.602 kb on - strand at 435.602 kb on - strand at 435.602 kb on - strand at 435.602 kb on - strand at 435.637 kb on - strand at 435.668 kb on - strand at 435.912 kb on + strand, within CCNA_00425 at 435.912 kb on + strand, within CCNA_00425 at 435.912 kb on + strand, within CCNA_00425 at 435.920 kb on - strand, within CCNA_00425 at 435.982 kb on + strand, within CCNA_00425 at 436.035 kb on + strand, within CCNA_00425 at 436.104 kb on + strand at 436.141 kb on + strand at 436.142 kb on - strand at 436.151 kb on + strand at 436.174 kb on - strand at 436.174 kb on - strand at 436.179 kb on - strand at 436.179 kb on - strand at 436.181 kb on + strand at 436.186 kb on + strand at 436.189 kb on - strand at 436.194 kb on - strand at 436.230 kb on + strand at 436.238 kb on - strand at 436.240 kb on + strand at 436.240 kb on + strand at 436.240 kb on + strand at 436.240 kb on + strand at 436.248 kb on - strand at 436.280 kb on + strand at 436.326 kb on + strand at 436.334 kb on - strand at 436.334 kb on - strand at 436.346 kb on - strand at 436.351 kb on + strand at 436.359 kb on - strand at 436.359 kb on - strand at 436.401 kb on + strand at 436.423 kb on + strand at 436.464 kb on + strand at 436.465 kb on - strand at 436.466 kb on - strand at 436.472 kb on - strand at 436.472 kb on - strand at 436.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep3 12 days remove 433,124 - CCNA_03919 0.42 +1.3 433,125 - CCNA_03919 0.43 -3.6 433,136 + CCNA_03919 0.57 +0.8 433,136 + CCNA_03919 0.57 -0.4 433,144 - CCNA_03919 0.67 +0.3 433,144 - CCNA_03919 0.67 +0.3 433,148 - CCNA_03919 0.72 -0.0 433,172 + +0.3 433,205 - -0.5 433,233 - +0.9 433,245 + -0.8 433,253 - -2.4 433,264 + +0.8 433,268 - -0.8 433,268 - -1.4 433,304 + -2.7 433,306 + +0.0 433,306 + +0.6 433,306 + -1.6 433,306 + +0.2 433,306 + -0.8 433,319 + -0.2 433,338 + -0.8 433,338 + -0.6 433,338 + +0.8 433,338 + +0.0 433,346 - -0.0 433,346 - -0.7 433,378 + -0.8 433,390 + -1.1 433,390 + +0.3 433,397 - +1.5 433,406 + +0.0 433,406 + +2.3 433,414 - -1.1 433,445 + -0.2 433,445 + -1.1 433,452 + CCNA_00423 0.10 -0.2 433,453 - CCNA_00423 0.10 +0.1 433,453 - CCNA_00423 0.10 -0.6 433,474 + CCNA_00423 0.15 -1.7 433,474 + CCNA_00423 0.15 -1.4 433,474 + CCNA_00423 0.15 -2.2 433,474 + CCNA_00423 0.15 -1.7 433,474 + CCNA_00423 0.15 +0.5 433,474 + CCNA_00423 0.15 -2.7 433,474 + CCNA_00423 0.15 -0.0 433,482 - CCNA_00423 0.17 -1.5 433,514 + CCNA_00423 0.23 -0.7 433,514 + CCNA_00423 0.23 +0.5 433,522 - CCNA_00423 0.25 -0.5 433,538 + CCNA_00423 0.28 -1.6 433,541 - CCNA_00423 0.29 +0.1 433,546 - CCNA_00423 0.30 +0.6 433,552 - CCNA_00423 0.31 +0.3 433,559 - CCNA_00423 0.33 +0.5 433,560 - CCNA_00423 0.33 -1.7 433,668 + CCNA_00423 0.56 +0.5 433,683 + CCNA_00423 0.59 +0.8 433,696 - CCNA_00423 0.62 +0.1 433,707 + CCNA_00423 0.64 +0.2 433,707 + CCNA_00423 0.64 -1.0 433,741 + CCNA_00423 0.72 +1.2 433,749 - CCNA_00423 0.73 +0.0 433,815 - CCNA_00423 0.87 -0.5 433,839 + -1.3 433,844 + +0.8 433,846 + +2.3 433,851 + +0.5 433,851 + -0.3 433,855 + -0.2 433,859 - -0.2 433,863 - +0.8 433,870 + +0.6 433,873 - -1.8 433,875 + -0.3 433,878 + +0.1 433,899 - +0.3 433,915 - +0.3 433,925 - -1.4 433,926 + -0.6 433,949 + -0.7 433,949 + -0.8 433,949 + +0.3 433,949 + +0.8 433,949 + +0.3 433,949 + -0.5 433,957 - +0.5 433,957 - +0.0 433,957 - -0.0 433,957 - +0.4 433,957 - -1.7 433,957 - -0.6 433,965 - -0.4 433,965 - +1.0 433,965 - -1.7 433,996 + +0.1 433,997 - -1.0 434,033 + +0.5 434,041 - -0.8 434,041 - -3.2 434,041 - -0.7 434,060 + +0.3 434,105 + -0.4 434,105 + +0.1 434,105 + +0.0 434,105 + -0.2 434,105 + +1.0 434,113 - -1.5 434,113 - +2.3 434,113 - +0.2 434,128 + -0.3 434,138 + -3.0 434,146 - -0.9 434,206 + -1.2 434,213 + -1.7 434,213 + -2.0 434,247 + -1.2 434,258 + -0.8 434,260 - -0.7 434,282 - CCNA_00424 0.11 -0.7 434,288 - CCNA_00424 0.12 +0.3 434,296 + CCNA_00424 0.12 -2.0 434,303 - CCNA_00424 0.13 +1.3 434,305 + CCNA_00424 0.13 -1.6 434,305 + CCNA_00424 0.13 -1.0 434,305 + CCNA_00424 0.13 -1.9 434,357 - CCNA_00424 0.16 +0.0 434,372 + CCNA_00424 0.17 -0.3 434,372 + CCNA_00424 0.17 -1.6 434,372 + CCNA_00424 0.17 -1.6 434,372 + CCNA_00424 0.17 -2.2 434,372 + CCNA_00424 0.17 -2.5 434,386 - CCNA_00424 0.18 -1.1 434,410 + CCNA_00424 0.20 -0.5 434,410 + CCNA_00424 0.20 -1.5 434,434 + CCNA_00424 0.22 -2.4 434,446 + CCNA_00424 0.23 -2.4 434,451 + CCNA_00424 0.23 -1.8 434,451 + CCNA_00424 0.23 -0.8 434,451 + CCNA_00424 0.23 -1.3 434,454 - CCNA_00424 0.23 -0.5 434,454 - CCNA_00424 0.23 -2.7 434,458 - CCNA_00424 0.23 +0.3 434,459 - CCNA_00424 0.23 -0.2 434,471 + CCNA_00424 0.24 -1.9 434,523 + CCNA_00424 0.28 -1.8 434,549 - CCNA_00424 0.30 -1.7 434,553 + CCNA_00424 0.30 -2.1 434,561 - CCNA_00424 0.31 +1.3 434,622 + CCNA_00424 0.35 -1.2 434,624 + CCNA_00424 0.35 -0.1 434,624 + CCNA_00424 0.35 -1.4 434,624 + CCNA_00424 0.35 -2.5 434,631 + CCNA_00424 0.35 -2.3 434,632 - CCNA_00424 0.35 -1.2 434,691 - +0.0 434,713 - CCNA_00424 0.41 +0.0 434,714 + CCNA_00424 0.41 -1.9 434,722 - CCNA_00424 0.42 -0.2 434,795 - CCNA_00424 0.47 +0.3 434,803 + CCNA_00424 0.47 -1.5 434,814 + CCNA_00424 0.48 -0.5 434,847 + CCNA_00424 0.50 -2.8 434,848 + CCNA_00424 0.50 -2.1 434,848 + CCNA_00424 0.50 -2.8 434,853 + CCNA_00424 0.51 -2.3 434,856 - CCNA_00424 0.51 -1.8 434,870 + CCNA_00424 0.52 -1.3 434,871 + CCNA_00424 0.52 -2.1 434,878 - CCNA_00424 0.53 -0.7 434,932 - CCNA_00424 0.56 -0.7 434,941 + CCNA_00424 0.57 -1.5 434,941 + CCNA_00424 0.57 +0.3 434,946 + CCNA_00424 0.57 -1.4 434,949 - CCNA_00424 0.57 -1.0 434,954 - CCNA_00424 0.58 -3.4 434,959 - CCNA_00424 0.58 -1.0 434,974 + CCNA_00424 0.59 -2.8 434,978 + CCNA_00424 0.60 -0.8 434,986 - CCNA_00424 0.60 -1.2 434,986 - CCNA_00424 0.60 +0.0 435,022 - CCNA_00424 0.63 +0.3 435,091 - CCNA_00424 0.67 -1.9 435,098 - CCNA_00424 0.68 -2.8 435,104 + CCNA_00424 0.68 -0.9 435,125 + CCNA_00424 0.70 -3.1 435,127 + CCNA_00424 0.70 -3.3 435,139 + CCNA_00424 0.71 -1.4 435,147 - CCNA_00424 0.71 +1.3 435,152 - CCNA_00424 0.72 -0.2 435,157 - CCNA_00424 0.72 -2.4 435,157 - CCNA_00424 0.72 +0.8 435,170 + CCNA_00424 0.73 -3.5 435,185 - CCNA_00424 0.74 +0.8 435,185 - CCNA_00424 0.74 -3.3 435,185 - CCNA_00424 0.74 -1.1 435,188 + CCNA_00424 0.74 -0.6 435,188 + CCNA_00424 0.74 -1.0 435,196 + CCNA_00424 0.75 -1.4 435,196 + CCNA_00424 0.75 -0.9 435,276 + CCNA_00424 0.80 -0.4 435,276 + CCNA_00424 0.80 -0.9 435,276 + CCNA_00424 0.80 -1.2 435,276 + CCNA_00424 0.80 -1.4 435,294 - CCNA_00424 0.81 +0.3 435,327 + CCNA_00424 0.84 -1.7 435,328 - CCNA_00424 0.84 +1.3 435,336 - CCNA_00424 0.84 -2.0 435,341 + CCNA_00424 0.85 -0.9 435,360 + CCNA_00424 0.86 -1.4 435,372 + CCNA_00424 0.87 -0.7 435,372 + CCNA_00424 0.87 -1.4 435,382 - CCNA_00424 0.88 -1.5 435,410 - CCNA_00424 0.90 +2.3 435,435 - -2.0 435,555 + +1.3 435,584 + +0.0 435,592 - -1.0 435,594 + +0.5 435,594 + +0.3 435,602 - +1.3 435,602 - +1.3 435,602 - +0.6 435,602 - +1.3 435,637 - +0.8 435,668 - +0.8 435,912 + CCNA_00425 0.60 -1.1 435,912 + CCNA_00425 0.60 -0.2 435,912 + CCNA_00425 0.60 -2.3 435,920 - CCNA_00425 0.62 +0.2 435,982 + CCNA_00425 0.76 -0.3 436,035 + CCNA_00425 0.87 +0.3 436,104 + +2.3 436,141 + -0.0 436,142 - +0.3 436,151 + +0.6 436,174 - -1.0 436,174 - +0.1 436,179 - +0.4 436,179 - -0.2 436,181 + +0.7 436,186 + +0.3 436,189 - +1.5 436,194 - +0.3 436,230 + -0.0 436,238 - +0.3 436,240 + +0.3 436,240 + +0.3 436,240 + +0.8 436,240 + -0.2 436,248 - -0.1 436,280 + +0.4 436,326 + +0.5 436,334 - -0.2 436,334 - -0.2 436,346 - -0.2 436,351 + -0.0 436,359 - +0.5 436,359 - -0.8 436,401 + -0.8 436,423 + +1.6 436,464 + +0.3 436,465 - -0.1 436,466 - -0.5 436,472 - +0.3 436,472 - +0.0 436,549 - -1.0
Or see this region's nucleotide sequence