Experiment: PYE_noCalcium 30C survival rep3 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00033 and CCNA_00034 are separated by 248 nucleotides CCNA_00034 and CCNA_00035 are separated by 14 nucleotides CCNA_00035 and CCNA_00036 are separated by 2 nucleotides
CCNA_00033: CCNA_00033 - polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase, at 35,824 to 37,962
_00033
CCNA_00034: CCNA_00034 - SSU ribosomal protein S15P, at 38,211 to 38,480
_00034
CCNA_00035: CCNA_00035 - tRNA pseudouridine synthase B, at 38,495 to 39,427
_00035
CCNA_00036: CCNA_00036 - ribosome-binding factor A, at 39,430 to 39,879
_00036
Position (kb) 38
39 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 38.012 kb on - strand at 38.036 kb on - strand at 38.050 kb on - strand at 38.050 kb on - strand at 38.050 kb on - strand at 38.050 kb on - strand at 38.050 kb on - strand at 38.064 kb on + strand at 38.064 kb on + strand at 38.072 kb on - strand at 38.072 kb on - strand at 38.080 kb on + strand at 38.080 kb on + strand at 38.080 kb on + strand at 38.088 kb on - strand at 38.088 kb on - strand at 38.125 kb on + strand at 38.815 kb on + strand, within CCNA_00035 at 38.823 kb on - strand, within CCNA_00035 at 38.823 kb on - strand, within CCNA_00035 at 38.867 kb on - strand, within CCNA_00035 at 38.870 kb on + strand, within CCNA_00035 at 38.871 kb on + strand, within CCNA_00035 at 38.890 kb on + strand, within CCNA_00035 at 38.916 kb on - strand, within CCNA_00035 at 38.942 kb on - strand, within CCNA_00035 at 38.949 kb on + strand, within CCNA_00035 at 38.953 kb on - strand, within CCNA_00035 at 38.975 kb on - strand, within CCNA_00035 at 39.016 kb on + strand, within CCNA_00035 at 39.016 kb on + strand, within CCNA_00035 at 39.024 kb on - strand, within CCNA_00035 at 39.048 kb on + strand, within CCNA_00035 at 39.120 kb on - strand, within CCNA_00035 at 39.130 kb on + strand, within CCNA_00035 at 39.130 kb on + strand, within CCNA_00035 at 39.130 kb on + strand, within CCNA_00035 at 39.130 kb on + strand, within CCNA_00035 at 39.130 kb on + strand, within CCNA_00035 at 39.138 kb on - strand, within CCNA_00035 at 39.138 kb on - strand, within CCNA_00035 at 39.138 kb on - strand, within CCNA_00035 at 39.138 kb on - strand, within CCNA_00035 at 39.138 kb on - strand, within CCNA_00035 at 39.138 kb on - strand, within CCNA_00035 at 39.190 kb on - strand, within CCNA_00035 at 39.236 kb on + strand, within CCNA_00035 at 39.245 kb on - strand, within CCNA_00035 at 39.268 kb on + strand, within CCNA_00035 at 39.273 kb on + strand, within CCNA_00035 at 39.281 kb on - strand, within CCNA_00035 at 39.348 kb on + strand at 39.351 kb on - strand at 39.359 kb on + strand at 39.362 kb on - strand at 39.372 kb on - strand at 39.372 kb on - strand at 39.380 kb on - strand at 39.385 kb on - strand at 39.392 kb on + strand at 39.428 kb on + strand at 39.429 kb on - strand at 39.433 kb on + strand at 39.433 kb on + strand at 39.436 kb on - strand at 39.464 kb on - strand at 39.464 kb on - strand at 39.480 kb on + strand, within CCNA_00036
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep3 12 days remove 38,012 - +1.2 38,036 - +0.9 38,050 - +0.8 38,050 - +0.6 38,050 - +0.5 38,050 - +0.5 38,050 - +0.4 38,064 + +0.6 38,064 + +0.2 38,072 - +0.7 38,072 - +0.8 38,080 + +2.1 38,080 + +0.5 38,080 + +0.5 38,088 - +1.0 38,088 - +1.0 38,125 + +0.1 38,815 + CCNA_00035 0.34 +0.8 38,823 - CCNA_00035 0.35 +1.6 38,823 - CCNA_00035 0.35 +2.4 38,867 - CCNA_00035 0.40 +1.3 38,870 + CCNA_00035 0.40 +0.4 38,871 + CCNA_00035 0.40 +0.5 38,890 + CCNA_00035 0.42 -0.7 38,916 - CCNA_00035 0.45 +2.6 38,942 - CCNA_00035 0.48 +1.9 38,949 + CCNA_00035 0.49 +0.5 38,953 - CCNA_00035 0.49 +1.7 38,975 - CCNA_00035 0.51 +1.5 39,016 + CCNA_00035 0.56 +0.9 39,016 + CCNA_00035 0.56 +1.1 39,024 - CCNA_00035 0.57 +2.1 39,048 + CCNA_00035 0.59 +0.8 39,120 - CCNA_00035 0.67 +1.6 39,130 + CCNA_00035 0.68 -0.2 39,130 + CCNA_00035 0.68 -0.2 39,130 + CCNA_00035 0.68 -0.4 39,130 + CCNA_00035 0.68 -2.2 39,130 + CCNA_00035 0.68 +1.3 39,138 - CCNA_00035 0.69 +1.5 39,138 - CCNA_00035 0.69 +1.0 39,138 - CCNA_00035 0.69 +1.4 39,138 - CCNA_00035 0.69 +1.2 39,138 - CCNA_00035 0.69 +1.7 39,138 - CCNA_00035 0.69 +1.7 39,190 - CCNA_00035 0.74 +1.7 39,236 + CCNA_00035 0.79 +0.3 39,245 - CCNA_00035 0.80 +1.9 39,268 + CCNA_00035 0.83 +1.0 39,273 + CCNA_00035 0.83 -0.3 39,281 - CCNA_00035 0.84 +1.2 39,348 + -0.2 39,351 - +2.5 39,359 + -0.2 39,362 - +1.4 39,372 - +1.6 39,372 - +1.5 39,380 - +1.3 39,385 - +1.7 39,392 + +1.4 39,428 + -0.4 39,429 - +2.8 39,433 + -0.8 39,433 + +1.2 39,436 - +0.6 39,464 - +0.4 39,464 - -0.5 39,480 + CCNA_00036 0.11 -0.2
Or see this region's nucleotide sequence