Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18660

Experiment: L-Cysteine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18650 and BWI76_RS18655 are separated by 46 nucleotidesBWI76_RS18655 and BWI76_RS18660 are separated by 75 nucleotidesBWI76_RS18660 and BWI76_RS18665 are separated by 10 nucleotidesBWI76_RS18665 and BWI76_RS18670 are separated by 12 nucleotides BWI76_RS18650: BWI76_RS18650 - fimbrial protein, at 3,866,162 to 3,866,698 _RS18650 BWI76_RS18655: BWI76_RS18655 - chaperone FimC, periplasmic, at 3,866,745 to 3,867,455 _RS18655 BWI76_RS18660: BWI76_RS18660 - hypothetical protein, at 3,867,531 to 3,870,158 _RS18660 BWI76_RS18665: BWI76_RS18665 - hypothetical protein, at 3,870,169 to 3,870,696 _RS18665 BWI76_RS18670: BWI76_RS18670 - hypothetical protein, at 3,870,709 to 3,871,212 _RS18670 Position (kb) 3867 3868 3869 3870 3871Strain fitness (log2 ratio) -1 0 1at 3866.552 kb on - strand, within BWI76_RS18650at 3866.849 kb on + strand, within BWI76_RS18655at 3867.285 kb on - strand, within BWI76_RS18655at 3867.421 kb on + strandat 3867.473 kb on + strandat 3867.474 kb on + strandat 3867.512 kb on + strandat 3867.580 kb on - strandat 3867.653 kb on + strandat 3868.840 kb on + strand, within BWI76_RS18660at 3868.850 kb on + strand, within BWI76_RS18660at 3868.855 kb on + strand, within BWI76_RS18660at 3869.287 kb on + strand, within BWI76_RS18660at 3869.432 kb on + strand, within BWI76_RS18660at 3869.555 kb on - strand, within BWI76_RS18660at 3869.622 kb on + strand, within BWI76_RS18660at 3869.654 kb on - strand, within BWI76_RS18660at 3869.859 kb on - strand, within BWI76_RS18660at 3869.908 kb on - strandat 3870.140 kb on + strandat 3870.808 kb on + strand, within BWI76_RS18670at 3870.872 kb on + strand, within BWI76_RS18670at 3871.055 kb on + strand, within BWI76_RS18670

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Cysteine (N)
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3,866,552 - BWI76_RS18650 0.73 -1.5
3,866,849 + BWI76_RS18655 0.15 -0.3
3,867,285 - BWI76_RS18655 0.76 +0.1
3,867,421 + -0.4
3,867,473 + -0.3
3,867,474 + -0.7
3,867,512 + -0.9
3,867,580 - -0.1
3,867,653 + -0.7
3,868,840 + BWI76_RS18660 0.50 +1.5
3,868,850 + BWI76_RS18660 0.50 -0.3
3,868,855 + BWI76_RS18660 0.50 +1.4
3,869,287 + BWI76_RS18660 0.67 +0.8
3,869,432 + BWI76_RS18660 0.72 +1.2
3,869,555 - BWI76_RS18660 0.77 +0.6
3,869,622 + BWI76_RS18660 0.80 -0.3
3,869,654 - BWI76_RS18660 0.81 +0.4
3,869,859 - BWI76_RS18660 0.89 -0.0
3,869,908 - -0.4
3,870,140 + +0.3
3,870,808 + BWI76_RS18670 0.20 -0.0
3,870,872 + BWI76_RS18670 0.32 -0.7
3,871,055 + BWI76_RS18670 0.69 -0.0

Or see this region's nucleotide sequence