Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17155

Experiment: L-Cysteine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17150 and BWI76_RS17155 overlap by 39 nucleotidesBWI76_RS17155 and BWI76_RS17160 are separated by 42 nucleotidesBWI76_RS17160 and BWI76_RS17165 are separated by 14 nucleotidesBWI76_RS17165 and BWI76_RS17170 are separated by 270 nucleotides BWI76_RS17150: BWI76_RS17150 - threonine--tRNA ligase, at 3,556,079 to 3,558,007 _RS17150 BWI76_RS17155: BWI76_RS17155 - hypothetical protein, at 3,557,969 to 3,558,181 _RS17155 BWI76_RS17160: BWI76_RS17160 - hypothetical protein, at 3,558,224 to 3,558,442 _RS17160 BWI76_RS17165: BWI76_RS17165 - hypothetical protein, at 3,558,457 to 3,558,690 _RS17165 BWI76_RS17170: BWI76_RS17170 - membrane protein, at 3,558,961 to 3,559,719 _RS17170 Position (kb) 3557 3558 3559Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3558.090 kb on - strand, within BWI76_RS17155at 3558.122 kb on - strand, within BWI76_RS17155at 3558.183 kb on - strandat 3558.188 kb on + strandat 3558.188 kb on + strandat 3558.188 kb on + strandat 3558.188 kb on + strandat 3558.188 kb on + strandat 3558.196 kb on - strandat 3558.196 kb on - strandat 3558.227 kb on - strandat 3558.308 kb on - strand, within BWI76_RS17160at 3558.310 kb on + strand, within BWI76_RS17160at 3558.333 kb on + strand, within BWI76_RS17160at 3558.395 kb on + strand, within BWI76_RS17160at 3558.395 kb on + strand, within BWI76_RS17160at 3558.395 kb on + strand, within BWI76_RS17160at 3558.395 kb on + strand, within BWI76_RS17160at 3558.398 kb on - strand, within BWI76_RS17160at 3558.402 kb on - strand, within BWI76_RS17160at 3558.403 kb on - strand, within BWI76_RS17160at 3558.403 kb on - strand, within BWI76_RS17160at 3558.403 kb on - strand, within BWI76_RS17160at 3558.403 kb on - strand, within BWI76_RS17160at 3558.405 kb on + strand, within BWI76_RS17160at 3558.405 kb on + strand, within BWI76_RS17160at 3558.413 kb on - strand, within BWI76_RS17160at 3558.443 kb on - strandat 3558.454 kb on - strandat 3558.455 kb on + strandat 3558.463 kb on + strandat 3558.472 kb on + strandat 3558.480 kb on + strandat 3558.502 kb on + strand, within BWI76_RS17165at 3558.503 kb on + strand, within BWI76_RS17165at 3558.511 kb on - strand, within BWI76_RS17165at 3558.521 kb on - strand, within BWI76_RS17165at 3558.534 kb on + strand, within BWI76_RS17165at 3558.541 kb on + strandat 3558.547 kb on - strand, within BWI76_RS17165at 3558.549 kb on - strand, within BWI76_RS17165at 3558.577 kb on + strand, within BWI76_RS17165at 3558.577 kb on + strand, within BWI76_RS17165at 3558.592 kb on + strand, within BWI76_RS17165at 3558.643 kb on - strand, within BWI76_RS17165at 3558.643 kb on - strand, within BWI76_RS17165at 3558.647 kb on + strand, within BWI76_RS17165at 3558.652 kb on - strand, within BWI76_RS17165at 3558.655 kb on - strand, within BWI76_RS17165at 3558.736 kb on + strandat 3558.736 kb on + strandat 3558.744 kb on - strandat 3558.744 kb on - strandat 3558.744 kb on - strandat 3558.746 kb on + strandat 3558.746 kb on + strandat 3558.746 kb on + strandat 3558.746 kb on + strandat 3558.746 kb on + strandat 3558.746 kb on + strandat 3558.746 kb on + strandat 3558.746 kb on + strandat 3558.748 kb on + strandat 3558.754 kb on + strandat 3558.754 kb on - strandat 3558.754 kb on - strandat 3558.754 kb on - strandat 3558.756 kb on + strandat 3558.756 kb on + strandat 3558.756 kb on + strandat 3558.756 kb on + strandat 3558.756 kb on + strandat 3558.756 kb on + strandat 3558.756 kb on + strandat 3558.756 kb on - strandat 3558.759 kb on - strandat 3558.764 kb on - strandat 3558.764 kb on - strandat 3558.764 kb on - strandat 3558.764 kb on - strandat 3558.764 kb on - strandat 3558.764 kb on - strandat 3558.764 kb on - strandat 3558.764 kb on - strandat 3558.940 kb on + strandat 3558.989 kb on - strandat 3558.989 kb on - strandat 3559.005 kb on - strandat 3559.013 kb on - strandat 3559.016 kb on + strandat 3559.031 kb on + strandat 3559.034 kb on - strandat 3559.044 kb on + strand, within BWI76_RS17170at 3559.053 kb on - strand, within BWI76_RS17170at 3559.055 kb on + strand, within BWI76_RS17170at 3559.087 kb on + strand, within BWI76_RS17170at 3559.087 kb on + strand, within BWI76_RS17170at 3559.087 kb on + strand, within BWI76_RS17170at 3559.105 kb on - strand, within BWI76_RS17170at 3559.105 kb on - strand, within BWI76_RS17170at 3559.146 kb on + strand, within BWI76_RS17170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Cysteine (N)
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3,558,090 - BWI76_RS17155 0.57 -0.3
3,558,122 - BWI76_RS17155 0.72 -1.5
3,558,183 - +0.0
3,558,188 + +0.8
3,558,188 + +0.0
3,558,188 + -0.2
3,558,188 + -0.7
3,558,188 + -1.6
3,558,196 - +0.5
3,558,196 - +0.2
3,558,227 - -0.2
3,558,308 - BWI76_RS17160 0.38 -0.2
3,558,310 + BWI76_RS17160 0.39 +0.9
3,558,333 + BWI76_RS17160 0.50 +0.7
3,558,395 + BWI76_RS17160 0.78 +0.3
3,558,395 + BWI76_RS17160 0.78 +0.1
3,558,395 + BWI76_RS17160 0.78 +0.8
3,558,395 + BWI76_RS17160 0.78 -0.1
3,558,398 - BWI76_RS17160 0.79 -1.3
3,558,402 - BWI76_RS17160 0.81 -0.7
3,558,403 - BWI76_RS17160 0.82 -0.5
3,558,403 - BWI76_RS17160 0.82 +0.3
3,558,403 - BWI76_RS17160 0.82 -0.9
3,558,403 - BWI76_RS17160 0.82 +0.1
3,558,405 + BWI76_RS17160 0.83 +0.1
3,558,405 + BWI76_RS17160 0.83 -0.7
3,558,413 - BWI76_RS17160 0.86 +0.5
3,558,443 - +1.6
3,558,454 - -1.7
3,558,455 + +1.2
3,558,463 + -0.2
3,558,472 + +0.2
3,558,480 + -0.2
3,558,502 + BWI76_RS17165 0.19 -0.3
3,558,503 + BWI76_RS17165 0.20 +0.3
3,558,511 - BWI76_RS17165 0.23 -0.3
3,558,521 - BWI76_RS17165 0.27 -0.1
3,558,534 + BWI76_RS17165 0.33 -0.6
3,558,541 + +2.8
3,558,547 - BWI76_RS17165 0.38 -0.2
3,558,549 - BWI76_RS17165 0.39 +0.1
3,558,577 + BWI76_RS17165 0.51 -1.3
3,558,577 + BWI76_RS17165 0.51 +2.0
3,558,592 + BWI76_RS17165 0.58 +0.6
3,558,643 - BWI76_RS17165 0.79 +1.8
3,558,643 - BWI76_RS17165 0.79 -0.5
3,558,647 + BWI76_RS17165 0.81 +0.3
3,558,652 - BWI76_RS17165 0.83 +0.0
3,558,655 - BWI76_RS17165 0.85 +1.8
3,558,736 + +0.1
3,558,736 + -1.8
3,558,744 - +0.4
3,558,744 - +1.5
3,558,744 - -0.2
3,558,746 + -0.7
3,558,746 + -0.6
3,558,746 + -1.7
3,558,746 + -1.6
3,558,746 + +0.1
3,558,746 + +0.9
3,558,746 + -0.9
3,558,746 + -1.3
3,558,748 + -0.3
3,558,754 + +0.5
3,558,754 - -1.2
3,558,754 - +0.0
3,558,754 - -1.9
3,558,756 + -0.6
3,558,756 + +0.1
3,558,756 + +1.2
3,558,756 + -3.1
3,558,756 + -0.5
3,558,756 + +0.2
3,558,756 + -0.5
3,558,756 - -1.0
3,558,759 - -0.1
3,558,764 - -0.9
3,558,764 - +0.4
3,558,764 - -1.0
3,558,764 - +1.2
3,558,764 - -1.2
3,558,764 - -1.3
3,558,764 - +0.0
3,558,764 - -0.4
3,558,940 + -0.3
3,558,989 - +0.6
3,558,989 - +1.6
3,559,005 - +0.5
3,559,013 - +0.2
3,559,016 + -0.3
3,559,031 + +0.3
3,559,034 - -0.2
3,559,044 + BWI76_RS17170 0.11 +0.1
3,559,053 - BWI76_RS17170 0.12 +0.8
3,559,055 + BWI76_RS17170 0.12 -0.6
3,559,087 + BWI76_RS17170 0.17 -1.2
3,559,087 + BWI76_RS17170 0.17 -0.4
3,559,087 + BWI76_RS17170 0.17 +0.0
3,559,105 - BWI76_RS17170 0.19 +1.9
3,559,105 - BWI76_RS17170 0.19 +0.9
3,559,146 + BWI76_RS17170 0.24 +0.2

Or see this region's nucleotide sequence