Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09465

Experiment: L-Cysteine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09460 and BWI76_RS09465 are separated by 57 nucleotidesBWI76_RS09465 and BWI76_RS09470 are separated by 10 nucleotidesBWI76_RS09470 and BWI76_RS09475 overlap by 4 nucleotides BWI76_RS09460: BWI76_RS09460 - spermidine/putrescine ABC transporter substrate-binding protein PotF, at 1,980,576 to 1,981,688 _RS09460 BWI76_RS09465: BWI76_RS09465 - polyamine ABC transporter ATP-binding protein, at 1,981,746 to 1,982,924 _RS09465 BWI76_RS09470: BWI76_RS09470 - putrescine ABC transporter permease, at 1,982,935 to 1,983,888 _RS09470 BWI76_RS09475: BWI76_RS09475 - putrescine ABC transporter permease PotI, at 1,983,885 to 1,984,730 _RS09475 Position (kb) 1981 1982 1983Strain fitness (log2 ratio) -1 0 1 2at 1980.790 kb on - strand, within BWI76_RS09460at 1980.816 kb on - strand, within BWI76_RS09460at 1980.864 kb on - strand, within BWI76_RS09460at 1981.028 kb on + strand, within BWI76_RS09460at 1981.036 kb on - strand, within BWI76_RS09460at 1981.504 kb on - strand, within BWI76_RS09460at 1982.027 kb on - strand, within BWI76_RS09465at 1982.245 kb on - strand, within BWI76_RS09465at 1982.359 kb on - strand, within BWI76_RS09465at 1982.535 kb on - strand, within BWI76_RS09465at 1982.595 kb on + strand, within BWI76_RS09465at 1982.603 kb on - strand, within BWI76_RS09465at 1982.603 kb on - strand, within BWI76_RS09465at 1982.613 kb on - strand, within BWI76_RS09465at 1982.724 kb on + strandat 1982.869 kb on - strandat 1983.548 kb on - strand, within BWI76_RS09470at 1983.640 kb on - strand, within BWI76_RS09470at 1983.739 kb on + strand, within BWI76_RS09470at 1983.802 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Cysteine (N)
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1,980,790 - BWI76_RS09460 0.19 -0.6
1,980,816 - BWI76_RS09460 0.22 +0.0
1,980,864 - BWI76_RS09460 0.26 -0.1
1,981,028 + BWI76_RS09460 0.41 +0.7
1,981,036 - BWI76_RS09460 0.41 +2.2
1,981,504 - BWI76_RS09460 0.83 +0.6
1,982,027 - BWI76_RS09465 0.24 +0.2
1,982,245 - BWI76_RS09465 0.42 -1.1
1,982,359 - BWI76_RS09465 0.52 +0.3
1,982,535 - BWI76_RS09465 0.67 +0.5
1,982,595 + BWI76_RS09465 0.72 +1.8
1,982,603 - BWI76_RS09465 0.73 +2.3
1,982,603 - BWI76_RS09465 0.73 +0.4
1,982,613 - BWI76_RS09465 0.74 +0.4
1,982,724 + +0.2
1,982,869 - +2.4
1,983,548 - BWI76_RS09470 0.64 +0.3
1,983,640 - BWI76_RS09470 0.74 -1.0
1,983,739 + BWI76_RS09470 0.84 -0.3
1,983,802 - -1.1

Or see this region's nucleotide sequence