Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08970

Experiment: L-Cysteine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS08960 and BWI76_RS08965 are separated by 110 nucleotidesBWI76_RS08965 and BWI76_RS08970 overlap by 4 nucleotidesBWI76_RS08970 and BWI76_RS08975 are separated by 134 nucleotides BWI76_RS08960: BWI76_RS08960 - mechanosensitive channel protein, at 1,887,562 to 1,889,772 _RS08960 BWI76_RS08965: BWI76_RS08965 - glutamine ABC transporter ATP-binding protein, at 1,889,883 to 1,890,605 _RS08965 BWI76_RS08970: BWI76_RS08970 - glutamine ABC transporter permease GlnP, at 1,890,602 to 1,891,261 _RS08970 BWI76_RS08975: BWI76_RS08975 - amino acid ABC transporter substrate-binding protein, at 1,891,396 to 1,892,142 _RS08975 Position (kb) 1890 1891 1892Strain fitness (log2 ratio) -2 -1 0 1at 1889.803 kb on + strandat 1889.912 kb on + strandat 1890.342 kb on + strand, within BWI76_RS08965at 1890.421 kb on - strand, within BWI76_RS08965at 1890.461 kb on + strand, within BWI76_RS08965at 1890.469 kb on - strand, within BWI76_RS08965at 1890.474 kb on + strand, within BWI76_RS08965at 1890.487 kb on - strand, within BWI76_RS08965at 1890.645 kb on - strandat 1890.973 kb on - strand, within BWI76_RS08970at 1891.266 kb on - strandat 1891.266 kb on - strandat 1891.275 kb on - strandat 1891.379 kb on - strandat 1891.499 kb on - strand, within BWI76_RS08975at 1891.553 kb on + strand, within BWI76_RS08975at 1891.944 kb on + strand, within BWI76_RS08975at 1891.981 kb on + strand, within BWI76_RS08975at 1891.994 kb on - strand, within BWI76_RS08975at 1892.126 kb on - strandat 1892.145 kb on - strandat 1892.167 kb on + strandat 1892.167 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Cysteine (N)
remove
1,889,803 + +0.6
1,889,912 + -0.8
1,890,342 + BWI76_RS08965 0.63 +0.7
1,890,421 - BWI76_RS08965 0.74 +0.0
1,890,461 + BWI76_RS08965 0.80 +0.4
1,890,469 - BWI76_RS08965 0.81 -0.6
1,890,474 + BWI76_RS08965 0.82 +0.4
1,890,487 - BWI76_RS08965 0.84 -0.8
1,890,645 - -2.1
1,890,973 - BWI76_RS08970 0.56 -0.8
1,891,266 - -0.5
1,891,266 - -0.2
1,891,275 - -0.5
1,891,379 - -0.4
1,891,499 - BWI76_RS08975 0.14 -0.9
1,891,553 + BWI76_RS08975 0.21 +0.7
1,891,944 + BWI76_RS08975 0.73 +0.2
1,891,981 + BWI76_RS08975 0.78 -1.7
1,891,994 - BWI76_RS08975 0.80 +0.7
1,892,126 - -1.6
1,892,145 - +0.3
1,892,167 + -0.0
1,892,167 + -0.3

Or see this region's nucleotide sequence