Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2548

Experiment: 4 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2547 and DvMF_2548 are separated by 52 nucleotidesDvMF_2548 and DvMF_2549 overlap by 4 nucleotides DvMF_2547: DvMF_2547 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,218,793 to 3,219,587 _2547 DvMF_2548: DvMF_2548 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,219,640 to 3,222,225 _2548 DvMF_2549: DvMF_2549 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 3,222,222 to 3,223,562 _2549 Position (kb) 3219 3220 3221 3222 3223Strain fitness (log2 ratio) -1 0 1at 3218.893 kb on + strand, within DvMF_2547at 3218.969 kb on - strand, within DvMF_2547at 3218.988 kb on + strand, within DvMF_2547at 3219.011 kb on - strand, within DvMF_2547at 3219.486 kb on - strand, within DvMF_2547at 3219.567 kb on + strandat 3219.699 kb on + strandat 3219.749 kb on + strandat 3219.814 kb on - strandat 3220.204 kb on - strand, within DvMF_2548at 3220.249 kb on - strand, within DvMF_2548at 3220.259 kb on + strand, within DvMF_2548at 3220.259 kb on + strand, within DvMF_2548at 3220.259 kb on + strand, within DvMF_2548at 3220.267 kb on - strand, within DvMF_2548at 3220.267 kb on - strand, within DvMF_2548at 3220.267 kb on - strand, within DvMF_2548at 3220.537 kb on - strand, within DvMF_2548at 3220.759 kb on - strand, within DvMF_2548at 3220.782 kb on + strand, within DvMF_2548at 3220.843 kb on - strand, within DvMF_2548at 3221.146 kb on + strand, within DvMF_2548at 3221.334 kb on + strand, within DvMF_2548at 3221.433 kb on + strand, within DvMF_2548at 3221.582 kb on + strand, within DvMF_2548at 3221.689 kb on - strand, within DvMF_2548at 3221.742 kb on - strand, within DvMF_2548at 3221.774 kb on + strand, within DvMF_2548at 3221.774 kb on + strand, within DvMF_2548at 3221.782 kb on - strand, within DvMF_2548at 3221.953 kb on + strand, within DvMF_2548at 3222.046 kb on - strandat 3222.098 kb on - strandat 3222.171 kb on + strandat 3222.437 kb on - strand, within DvMF_2549at 3222.677 kb on + strand, within DvMF_2549at 3222.772 kb on - strand, within DvMF_2549at 3223.020 kb on - strand, within DvMF_2549at 3223.020 kb on - strand, within DvMF_2549at 3223.052 kb on - strand, within DvMF_2549

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 day starvation, 37C
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3,218,893 + DvMF_2547 0.13 -1.7
3,218,969 - DvMF_2547 0.22 -0.7
3,218,988 + DvMF_2547 0.25 -0.9
3,219,011 - DvMF_2547 0.27 -1.1
3,219,486 - DvMF_2547 0.87 -1.2
3,219,567 + -0.6
3,219,699 + +0.2
3,219,749 + +0.4
3,219,814 - +0.8
3,220,204 - DvMF_2548 0.22 +0.4
3,220,249 - DvMF_2548 0.24 -0.2
3,220,259 + DvMF_2548 0.24 -0.3
3,220,259 + DvMF_2548 0.24 +0.3
3,220,259 + DvMF_2548 0.24 +0.5
3,220,267 - DvMF_2548 0.24 +0.1
3,220,267 - DvMF_2548 0.24 +0.2
3,220,267 - DvMF_2548 0.24 +0.7
3,220,537 - DvMF_2548 0.35 +0.3
3,220,759 - DvMF_2548 0.43 +0.4
3,220,782 + DvMF_2548 0.44 +0.6
3,220,843 - DvMF_2548 0.47 -0.1
3,221,146 + DvMF_2548 0.58 -0.3
3,221,334 + DvMF_2548 0.66 +0.4
3,221,433 + DvMF_2548 0.69 +0.1
3,221,582 + DvMF_2548 0.75 -0.0
3,221,689 - DvMF_2548 0.79 +0.8
3,221,742 - DvMF_2548 0.81 +1.4
3,221,774 + DvMF_2548 0.83 +0.1
3,221,774 + DvMF_2548 0.83 +1.2
3,221,782 - DvMF_2548 0.83 -0.2
3,221,953 + DvMF_2548 0.89 +0.6
3,222,046 - +0.4
3,222,098 - -1.2
3,222,171 + +0.4
3,222,437 - DvMF_2549 0.16 +0.5
3,222,677 + DvMF_2549 0.34 +1.2
3,222,772 - DvMF_2549 0.41 +0.1
3,223,020 - DvMF_2549 0.60 +0.6
3,223,020 - DvMF_2549 0.60 +0.1
3,223,052 - DvMF_2549 0.62 -0.2

Or see this region's nucleotide sequence