Experiment: 4 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2547 and DvMF_2548 are separated by 52 nucleotides DvMF_2548 and DvMF_2549 overlap by 4 nucleotides
DvMF_2547: DvMF_2547 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,218,793 to 3,219,587
_2547
DvMF_2548: DvMF_2548 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,219,640 to 3,222,225
_2548
DvMF_2549: DvMF_2549 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 3,222,222 to 3,223,562
_2549
Position (kb)
3219
3220
3221
3222
3223 Strain fitness (log2 ratio)
-1
0
1 at 3218.893 kb on + strand, within DvMF_2547 at 3218.969 kb on - strand, within DvMF_2547 at 3218.988 kb on + strand, within DvMF_2547 at 3219.011 kb on - strand, within DvMF_2547 at 3219.486 kb on - strand, within DvMF_2547 at 3219.567 kb on + strand at 3219.699 kb on + strand at 3219.749 kb on + strand at 3219.814 kb on - strand at 3220.204 kb on - strand, within DvMF_2548 at 3220.249 kb on - strand, within DvMF_2548 at 3220.259 kb on + strand, within DvMF_2548 at 3220.259 kb on + strand, within DvMF_2548 at 3220.259 kb on + strand, within DvMF_2548 at 3220.267 kb on - strand, within DvMF_2548 at 3220.267 kb on - strand, within DvMF_2548 at 3220.267 kb on - strand, within DvMF_2548 at 3220.537 kb on - strand, within DvMF_2548 at 3220.759 kb on - strand, within DvMF_2548 at 3220.782 kb on + strand, within DvMF_2548 at 3220.843 kb on - strand, within DvMF_2548 at 3221.146 kb on + strand, within DvMF_2548 at 3221.334 kb on + strand, within DvMF_2548 at 3221.433 kb on + strand, within DvMF_2548 at 3221.582 kb on + strand, within DvMF_2548 at 3221.689 kb on - strand, within DvMF_2548 at 3221.742 kb on - strand, within DvMF_2548 at 3221.774 kb on + strand, within DvMF_2548 at 3221.774 kb on + strand, within DvMF_2548 at 3221.782 kb on - strand, within DvMF_2548 at 3221.953 kb on + strand, within DvMF_2548 at 3222.046 kb on - strand at 3222.098 kb on - strand at 3222.171 kb on + strand at 3222.437 kb on - strand, within DvMF_2549 at 3222.677 kb on + strand, within DvMF_2549 at 3222.772 kb on - strand, within DvMF_2549 at 3223.020 kb on - strand, within DvMF_2549 at 3223.020 kb on - strand, within DvMF_2549 at 3223.052 kb on - strand, within DvMF_2549
Per-strain Table
Position Strand Gene LocusTag Fraction 4 day starvation, 37C remove 3,218,893 + DvMF_2547 0.13 -1.7 3,218,969 - DvMF_2547 0.22 -0.7 3,218,988 + DvMF_2547 0.25 -0.9 3,219,011 - DvMF_2547 0.27 -1.1 3,219,486 - DvMF_2547 0.87 -1.2 3,219,567 + -0.6 3,219,699 + +0.2 3,219,749 + +0.4 3,219,814 - +0.8 3,220,204 - DvMF_2548 0.22 +0.4 3,220,249 - DvMF_2548 0.24 -0.2 3,220,259 + DvMF_2548 0.24 -0.3 3,220,259 + DvMF_2548 0.24 +0.3 3,220,259 + DvMF_2548 0.24 +0.5 3,220,267 - DvMF_2548 0.24 +0.1 3,220,267 - DvMF_2548 0.24 +0.2 3,220,267 - DvMF_2548 0.24 +0.7 3,220,537 - DvMF_2548 0.35 +0.3 3,220,759 - DvMF_2548 0.43 +0.4 3,220,782 + DvMF_2548 0.44 +0.6 3,220,843 - DvMF_2548 0.47 -0.1 3,221,146 + DvMF_2548 0.58 -0.3 3,221,334 + DvMF_2548 0.66 +0.4 3,221,433 + DvMF_2548 0.69 +0.1 3,221,582 + DvMF_2548 0.75 -0.0 3,221,689 - DvMF_2548 0.79 +0.8 3,221,742 - DvMF_2548 0.81 +1.4 3,221,774 + DvMF_2548 0.83 +0.1 3,221,774 + DvMF_2548 0.83 +1.2 3,221,782 - DvMF_2548 0.83 -0.2 3,221,953 + DvMF_2548 0.89 +0.6 3,222,046 - +0.4 3,222,098 - -1.2 3,222,171 + +0.4 3,222,437 - DvMF_2549 0.16 +0.5 3,222,677 + DvMF_2549 0.34 +1.2 3,222,772 - DvMF_2549 0.41 +0.1 3,223,020 - DvMF_2549 0.60 +0.6 3,223,020 - DvMF_2549 0.60 +0.1 3,223,052 - DvMF_2549 0.62 -0.2
Or see this region's nucleotide sequence