Experiment: 4 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1601 and DvMF_1602 are separated by 10 nucleotides DvMF_1602 and DvMF_1603 overlap by 14 nucleotides DvMF_1603 and DvMF_1604 are separated by 33 nucleotides
DvMF_1601: DvMF_1601 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,971,390 to 1,972,889
_1601
DvMF_1602: DvMF_1602 - hypothetical protein (RefSeq), at 1,972,900 to 1,973,157
_1602
DvMF_1603: DvMF_1603 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,973,144 to 1,974,928
_1603
DvMF_1604: DvMF_1604 - proton-translocating NADH-quinone oxidoreductase, chain M (RefSeq), at 1,974,962 to 1,976,521
_1604
Position (kb)
1973
1974
1975 Strain fitness (log2 ratio)
-2
-1
0
1 at 1972.230 kb on + strand, within DvMF_1601 at 1972.254 kb on - strand, within DvMF_1601 at 1972.316 kb on + strand, within DvMF_1601 at 1972.323 kb on + strand, within DvMF_1601 at 1972.392 kb on - strand, within DvMF_1601 at 1972.418 kb on - strand, within DvMF_1601 at 1972.525 kb on + strand, within DvMF_1601 at 1972.549 kb on + strand, within DvMF_1601 at 1972.640 kb on + strand, within DvMF_1601 at 1972.761 kb on + strand at 1972.968 kb on - strand, within DvMF_1602 at 1972.973 kb on - strand, within DvMF_1602 at 1973.042 kb on + strand, within DvMF_1602 at 1973.135 kb on - strand at 1973.140 kb on - strand at 1973.297 kb on - strand at 1973.308 kb on - strand at 1973.308 kb on - strand at 1973.323 kb on - strand, within DvMF_1603 at 1973.521 kb on - strand, within DvMF_1603 at 1973.554 kb on - strand, within DvMF_1603 at 1973.659 kb on - strand, within DvMF_1603 at 1973.913 kb on - strand, within DvMF_1603 at 1974.154 kb on + strand, within DvMF_1603 at 1974.334 kb on + strand, within DvMF_1603 at 1974.342 kb on - strand, within DvMF_1603 at 1974.387 kb on + strand, within DvMF_1603 at 1974.441 kb on - strand, within DvMF_1603 at 1974.568 kb on + strand, within DvMF_1603 at 1974.749 kb on - strand, within DvMF_1603 at 1974.806 kb on - strand at 1974.812 kb on + strand at 1974.857 kb on + strand at 1974.867 kb on + strand at 1975.392 kb on - strand, within DvMF_1604 at 1975.602 kb on - strand, within DvMF_1604 at 1975.895 kb on - strand, within DvMF_1604
Per-strain Table
Position Strand Gene LocusTag Fraction 4 day starvation, 37C remove 1,972,230 + DvMF_1601 0.56 -0.8 1,972,254 - DvMF_1601 0.58 -0.2 1,972,316 + DvMF_1601 0.62 -0.6 1,972,323 + DvMF_1601 0.62 +0.2 1,972,392 - DvMF_1601 0.67 +0.1 1,972,418 - DvMF_1601 0.69 -0.6 1,972,525 + DvMF_1601 0.76 -1.4 1,972,549 + DvMF_1601 0.77 -0.5 1,972,640 + DvMF_1601 0.83 -0.3 1,972,761 + -0.7 1,972,968 - DvMF_1602 0.26 -0.7 1,972,973 - DvMF_1602 0.28 -0.4 1,973,042 + DvMF_1602 0.55 -0.7 1,973,135 - -1.1 1,973,140 - +1.2 1,973,297 - -0.2 1,973,308 - -0.1 1,973,308 - -0.6 1,973,323 - DvMF_1603 0.10 -1.1 1,973,521 - DvMF_1603 0.21 -0.8 1,973,554 - DvMF_1603 0.23 -0.7 1,973,659 - DvMF_1603 0.29 -0.1 1,973,913 - DvMF_1603 0.43 -0.4 1,974,154 + DvMF_1603 0.57 -0.7 1,974,334 + DvMF_1603 0.67 -0.4 1,974,342 - DvMF_1603 0.67 -1.1 1,974,387 + DvMF_1603 0.70 +0.9 1,974,441 - DvMF_1603 0.73 +0.1 1,974,568 + DvMF_1603 0.80 -0.2 1,974,749 - DvMF_1603 0.90 -0.8 1,974,806 - -0.5 1,974,812 + -1.8 1,974,857 + -0.5 1,974,867 + +0.3 1,975,392 - DvMF_1604 0.28 -0.6 1,975,602 - DvMF_1604 0.41 -1.6 1,975,895 - DvMF_1604 0.60 -0.3
Or see this region's nucleotide sequence