Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1603

Experiment: 4 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1601 and DvMF_1602 are separated by 10 nucleotidesDvMF_1602 and DvMF_1603 overlap by 14 nucleotidesDvMF_1603 and DvMF_1604 are separated by 33 nucleotides DvMF_1601: DvMF_1601 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,971,390 to 1,972,889 _1601 DvMF_1602: DvMF_1602 - hypothetical protein (RefSeq), at 1,972,900 to 1,973,157 _1602 DvMF_1603: DvMF_1603 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,973,144 to 1,974,928 _1603 DvMF_1604: DvMF_1604 - proton-translocating NADH-quinone oxidoreductase, chain M (RefSeq), at 1,974,962 to 1,976,521 _1604 Position (kb) 1973 1974 1975Strain fitness (log2 ratio) -2 -1 0 1at 1972.230 kb on + strand, within DvMF_1601at 1972.254 kb on - strand, within DvMF_1601at 1972.316 kb on + strand, within DvMF_1601at 1972.323 kb on + strand, within DvMF_1601at 1972.392 kb on - strand, within DvMF_1601at 1972.418 kb on - strand, within DvMF_1601at 1972.525 kb on + strand, within DvMF_1601at 1972.549 kb on + strand, within DvMF_1601at 1972.640 kb on + strand, within DvMF_1601at 1972.761 kb on + strandat 1972.968 kb on - strand, within DvMF_1602at 1972.973 kb on - strand, within DvMF_1602at 1973.042 kb on + strand, within DvMF_1602at 1973.135 kb on - strandat 1973.140 kb on - strandat 1973.297 kb on - strandat 1973.308 kb on - strandat 1973.308 kb on - strandat 1973.323 kb on - strand, within DvMF_1603at 1973.521 kb on - strand, within DvMF_1603at 1973.554 kb on - strand, within DvMF_1603at 1973.659 kb on - strand, within DvMF_1603at 1973.913 kb on - strand, within DvMF_1603at 1974.154 kb on + strand, within DvMF_1603at 1974.334 kb on + strand, within DvMF_1603at 1974.342 kb on - strand, within DvMF_1603at 1974.387 kb on + strand, within DvMF_1603at 1974.441 kb on - strand, within DvMF_1603at 1974.568 kb on + strand, within DvMF_1603at 1974.749 kb on - strand, within DvMF_1603at 1974.806 kb on - strandat 1974.812 kb on + strandat 1974.857 kb on + strandat 1974.867 kb on + strandat 1975.392 kb on - strand, within DvMF_1604at 1975.602 kb on - strand, within DvMF_1604at 1975.895 kb on - strand, within DvMF_1604

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 day starvation, 37C
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1,972,230 + DvMF_1601 0.56 -0.8
1,972,254 - DvMF_1601 0.58 -0.2
1,972,316 + DvMF_1601 0.62 -0.6
1,972,323 + DvMF_1601 0.62 +0.2
1,972,392 - DvMF_1601 0.67 +0.1
1,972,418 - DvMF_1601 0.69 -0.6
1,972,525 + DvMF_1601 0.76 -1.4
1,972,549 + DvMF_1601 0.77 -0.5
1,972,640 + DvMF_1601 0.83 -0.3
1,972,761 + -0.7
1,972,968 - DvMF_1602 0.26 -0.7
1,972,973 - DvMF_1602 0.28 -0.4
1,973,042 + DvMF_1602 0.55 -0.7
1,973,135 - -1.1
1,973,140 - +1.2
1,973,297 - -0.2
1,973,308 - -0.1
1,973,308 - -0.6
1,973,323 - DvMF_1603 0.10 -1.1
1,973,521 - DvMF_1603 0.21 -0.8
1,973,554 - DvMF_1603 0.23 -0.7
1,973,659 - DvMF_1603 0.29 -0.1
1,973,913 - DvMF_1603 0.43 -0.4
1,974,154 + DvMF_1603 0.57 -0.7
1,974,334 + DvMF_1603 0.67 -0.4
1,974,342 - DvMF_1603 0.67 -1.1
1,974,387 + DvMF_1603 0.70 +0.9
1,974,441 - DvMF_1603 0.73 +0.1
1,974,568 + DvMF_1603 0.80 -0.2
1,974,749 - DvMF_1603 0.90 -0.8
1,974,806 - -0.5
1,974,812 + -1.8
1,974,857 + -0.5
1,974,867 + +0.3
1,975,392 - DvMF_1604 0.28 -0.6
1,975,602 - DvMF_1604 0.41 -1.6
1,975,895 - DvMF_1604 0.60 -0.3

Or see this region's nucleotide sequence