Experiment: 4 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1568 and DvMF_1569 overlap by 1 nucleotides DvMF_1569 and DvMF_1570 are separated by 10 nucleotides DvMF_1570 and DvMF_1571 are separated by 176 nucleotides
DvMF_1568: DvMF_1568 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,934,970 to 1,935,644
_1568
DvMF_1569: DvMF_1569 - ABC transporter related (RefSeq), at 1,935,644 to 1,936,429
_1569
DvMF_1570: DvMF_1570 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,936,440 to 1,937,120
_1570
DvMF_1571: DvMF_1571 - extracellular solute-binding protein family 3 (RefSeq), at 1,937,297 to 1,938,046
_1571
Position (kb)
1936
1937
1938 Strain fitness (log2 ratio)
-1
0
1
2 at 1935.510 kb on - strand, within DvMF_1568 at 1935.795 kb on + strand, within DvMF_1569 at 1935.799 kb on - strand, within DvMF_1569 at 1935.799 kb on - strand, within DvMF_1569 at 1936.314 kb on - strand, within DvMF_1569 at 1936.319 kb on - strand, within DvMF_1569 at 1936.494 kb on + strand at 1936.509 kb on - strand, within DvMF_1570 at 1936.510 kb on - strand, within DvMF_1570 at 1936.510 kb on - strand, within DvMF_1570 at 1936.554 kb on - strand, within DvMF_1570 at 1936.565 kb on + strand, within DvMF_1570 at 1936.642 kb on + strand, within DvMF_1570 at 1936.706 kb on + strand, within DvMF_1570 at 1936.827 kb on - strand, within DvMF_1570 at 1936.938 kb on - strand, within DvMF_1570 at 1936.999 kb on + strand, within DvMF_1570 at 1937.226 kb on + strand at 1937.254 kb on + strand at 1937.364 kb on - strand at 1937.457 kb on + strand, within DvMF_1571 at 1937.494 kb on + strand, within DvMF_1571 at 1937.569 kb on + strand, within DvMF_1571 at 1937.584 kb on - strand, within DvMF_1571 at 1937.633 kb on - strand, within DvMF_1571 at 1937.673 kb on + strand, within DvMF_1571 at 1937.682 kb on + strand, within DvMF_1571 at 1937.918 kb on - strand, within DvMF_1571
Per-strain Table
Position Strand Gene LocusTag Fraction 4 day starvation, 37C remove 1,935,510 - DvMF_1568 0.80 +0.9 1,935,795 + DvMF_1569 0.19 +0.3 1,935,799 - DvMF_1569 0.20 -0.2 1,935,799 - DvMF_1569 0.20 +0.7 1,936,314 - DvMF_1569 0.85 +0.4 1,936,319 - DvMF_1569 0.86 -0.4 1,936,494 + -0.1 1,936,509 - DvMF_1570 0.10 +0.2 1,936,510 - DvMF_1570 0.10 +0.1 1,936,510 - DvMF_1570 0.10 +0.1 1,936,554 - DvMF_1570 0.17 +0.3 1,936,565 + DvMF_1570 0.18 -0.1 1,936,642 + DvMF_1570 0.30 +0.6 1,936,706 + DvMF_1570 0.39 -0.3 1,936,827 - DvMF_1570 0.57 +0.3 1,936,938 - DvMF_1570 0.73 -0.1 1,936,999 + DvMF_1570 0.82 +0.2 1,937,226 + +0.8 1,937,254 + +0.5 1,937,364 - -0.0 1,937,457 + DvMF_1571 0.21 -0.6 1,937,494 + DvMF_1571 0.26 +0.2 1,937,569 + DvMF_1571 0.36 +2.3 1,937,584 - DvMF_1571 0.38 +0.4 1,937,633 - DvMF_1571 0.45 +1.7 1,937,673 + DvMF_1571 0.50 -0.4 1,937,682 + DvMF_1571 0.51 +1.3 1,937,918 - DvMF_1571 0.83 +0.1
Or see this region's nucleotide sequence