Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_473 and HP15_474 are separated by 264 nucleotides HP15_474 and HP15_475 are separated by 13 nucleotides HP15_475 and HP15_476 overlap by 4 nucleotides
HP15_473: HP15_473 - penicillin-binding protein, 1A family, at 482,627 to 485,116
_473
HP15_474: HP15_474 - type IV pilus biogenesis protein PilM, at 485,381 to 486,397
_474
HP15_475: HP15_475 - Tfp pilus assembly protein PilN, at 486,411 to 486,977
_475
HP15_476: HP15_476 - type 4 fimbrial biogenesis protein PilO, at 486,974 to 487,585
_476
Position (kb) 485
486
487 Strain fitness (log2 ratio) -1
0
1 at 485.325 kb on + strand at 485.325 kb on + strand at 485.333 kb on - strand at 485.335 kb on + strand at 485.335 kb on + strand at 485.335 kb on + strand at 485.335 kb on + strand at 485.343 kb on - strand at 485.515 kb on + strand, within HP15_474 at 485.515 kb on + strand, within HP15_474 at 485.515 kb on + strand, within HP15_474 at 485.534 kb on + strand, within HP15_474 at 485.746 kb on - strand, within HP15_474 at 485.754 kb on - strand, within HP15_474 at 485.778 kb on - strand, within HP15_474 at 485.846 kb on - strand, within HP15_474 at 485.880 kb on + strand, within HP15_474 at 485.888 kb on - strand, within HP15_474 at 485.888 kb on - strand, within HP15_474 at 485.888 kb on - strand, within HP15_474 at 485.888 kb on - strand, within HP15_474 at 485.888 kb on - strand, within HP15_474 at 485.902 kb on + strand, within HP15_474 at 486.094 kb on + strand, within HP15_474 at 486.094 kb on + strand, within HP15_474 at 486.107 kb on + strand, within HP15_474 at 486.134 kb on - strand, within HP15_474 at 486.194 kb on + strand, within HP15_474 at 486.199 kb on + strand, within HP15_474 at 486.229 kb on - strand, within HP15_474 at 486.342 kb on + strand at 486.342 kb on - strand at 486.352 kb on + strand at 486.433 kb on - strand at 486.454 kb on - strand at 486.552 kb on + strand, within HP15_475 at 486.586 kb on - strand, within HP15_475 at 486.619 kb on - strand, within HP15_475 at 486.882 kb on - strand, within HP15_475 at 486.899 kb on - strand, within HP15_475
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 485,325 + +1.7 485,325 + -0.1 485,333 - +0.1 485,335 + +0.4 485,335 + -0.2 485,335 + -0.8 485,335 + +0.5 485,343 - +0.6 485,515 + HP15_474 0.13 +0.6 485,515 + HP15_474 0.13 +0.4 485,515 + HP15_474 0.13 +0.5 485,534 + HP15_474 0.15 +1.3 485,746 - HP15_474 0.36 +0.1 485,754 - HP15_474 0.37 +1.1 485,778 - HP15_474 0.39 +0.5 485,846 - HP15_474 0.46 -0.3 485,880 + HP15_474 0.49 +0.7 485,888 - HP15_474 0.50 +0.9 485,888 - HP15_474 0.50 -0.9 485,888 - HP15_474 0.50 +1.2 485,888 - HP15_474 0.50 -0.9 485,888 - HP15_474 0.50 +1.1 485,902 + HP15_474 0.51 -0.3 486,094 + HP15_474 0.70 +0.7 486,094 + HP15_474 0.70 +1.7 486,107 + HP15_474 0.71 +0.7 486,134 - HP15_474 0.74 +0.6 486,194 + HP15_474 0.80 +0.5 486,199 + HP15_474 0.80 +0.7 486,229 - HP15_474 0.83 -1.0 486,342 + +0.8 486,342 - -0.6 486,352 + +0.3 486,433 - +0.9 486,454 - +1.3 486,552 + HP15_475 0.25 +0.6 486,586 - HP15_475 0.31 +0.6 486,619 - HP15_475 0.37 +1.0 486,882 - HP15_475 0.83 -0.3 486,899 - HP15_475 0.86 +1.0
Or see this region's nucleotide sequence