Strain Fitness in Marinobacter adhaerens HP15 around HP15_4168

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4167 and HP15_4168 are separated by 598 nucleotidesHP15_4168 and HP15_4169 are separated by 575 nucleotides HP15_4167: HP15_4167 - conserved hypothetical protein, at 4,404,083 to 4,404,550 _4167 HP15_4168: HP15_4168 - hypothetical protein, at 4,405,149 to 4,405,256 _4168 HP15_4169: HP15_4169 - diguanylate cyclase (GGDEF domain), at 4,405,832 to 4,406,788 _4169 Position (kb) 4405 4406Strain fitness (log2 ratio) -3 -2 -1 0 1at 4404.175 kb on - strand, within HP15_4167at 4404.311 kb on + strand, within HP15_4167at 4404.325 kb on + strand, within HP15_4167at 4404.333 kb on - strand, within HP15_4167at 4404.333 kb on - strand, within HP15_4167at 4404.334 kb on + strand, within HP15_4167at 4404.349 kb on - strand, within HP15_4167at 4404.375 kb on - strand, within HP15_4167at 4404.474 kb on - strand, within HP15_4167at 4404.481 kb on + strand, within HP15_4167at 4404.669 kb on + strandat 4404.669 kb on + strandat 4404.686 kb on + strandat 4404.686 kb on + strandat 4404.691 kb on + strandat 4404.767 kb on + strandat 4404.767 kb on + strandat 4404.770 kb on - strandat 4404.816 kb on - strandat 4404.905 kb on + strandat 4404.976 kb on + strandat 4405.136 kb on - strandat 4405.138 kb on + strandat 4405.191 kb on - strand, within HP15_4168at 4405.195 kb on + strand, within HP15_4168at 4405.203 kb on - strand, within HP15_4168at 4405.207 kb on + strand, within HP15_4168at 4405.287 kb on + strandat 4405.287 kb on + strandat 4405.287 kb on + strandat 4405.295 kb on - strandat 4405.295 kb on - strandat 4405.295 kb on - strandat 4405.314 kb on + strandat 4405.427 kb on + strandat 4405.435 kb on - strandat 4405.445 kb on - strandat 4405.456 kb on - strandat 4405.462 kb on + strandat 4405.492 kb on + strandat 4405.559 kb on + strandat 4405.612 kb on - strandat 4405.647 kb on - strandat 4405.706 kb on + strandat 4405.791 kb on - strandat 4405.829 kb on + strandat 4405.854 kb on + strandat 4405.862 kb on - strandat 4405.862 kb on - strandat 4406.027 kb on + strand, within HP15_4169at 4406.035 kb on - strand, within HP15_4169at 4406.074 kb on - strand, within HP15_4169at 4406.144 kb on + strand, within HP15_4169at 4406.144 kb on + strand, within HP15_4169at 4406.191 kb on + strand, within HP15_4169at 4406.210 kb on + strand, within HP15_4169at 4406.218 kb on - strand, within HP15_4169at 4406.248 kb on + strand, within HP15_4169at 4406.256 kb on - strand, within HP15_4169at 4406.256 kb on - strand, within HP15_4169

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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4,404,175 - HP15_4167 0.20 -0.9
4,404,311 + HP15_4167 0.49 +1.1
4,404,325 + HP15_4167 0.52 +0.7
4,404,333 - HP15_4167 0.53 -1.5
4,404,333 - HP15_4167 0.53 +0.0
4,404,334 + HP15_4167 0.54 -0.2
4,404,349 - HP15_4167 0.57 +0.5
4,404,375 - HP15_4167 0.62 +0.9
4,404,474 - HP15_4167 0.84 -1.6
4,404,481 + HP15_4167 0.85 -0.0
4,404,669 + +0.3
4,404,669 + +0.0
4,404,686 + +0.9
4,404,686 + -0.1
4,404,691 + -0.5
4,404,767 + +0.8
4,404,767 + +0.7
4,404,770 - +0.6
4,404,816 - -0.7
4,404,905 + -2.4
4,404,976 + +1.0
4,405,136 - +1.1
4,405,138 + +1.5
4,405,191 - HP15_4168 0.39 -1.0
4,405,195 + HP15_4168 0.43 -0.5
4,405,203 - HP15_4168 0.50 -0.2
4,405,207 + HP15_4168 0.54 -1.1
4,405,287 + -1.1
4,405,287 + +0.8
4,405,287 + +1.4
4,405,295 - -1.3
4,405,295 - +0.3
4,405,295 - +1.5
4,405,314 + +0.1
4,405,427 + +0.8
4,405,435 - -2.1
4,405,445 - +0.5
4,405,456 - +0.6
4,405,462 + +0.2
4,405,492 + +0.5
4,405,559 + +0.3
4,405,612 - -0.5
4,405,647 - +0.2
4,405,706 + +1.6
4,405,791 - +0.4
4,405,829 + +0.9
4,405,854 + +0.2
4,405,862 - -0.2
4,405,862 - -0.9
4,406,027 + HP15_4169 0.20 -0.8
4,406,035 - HP15_4169 0.21 -0.2
4,406,074 - HP15_4169 0.25 -0.3
4,406,144 + HP15_4169 0.33 -0.3
4,406,144 + HP15_4169 0.33 +0.6
4,406,191 + HP15_4169 0.38 +0.7
4,406,210 + HP15_4169 0.39 -1.3
4,406,218 - HP15_4169 0.40 +0.2
4,406,248 + HP15_4169 0.43 -2.8
4,406,256 - HP15_4169 0.44 +0.5
4,406,256 - HP15_4169 0.44 +0.7

Or see this region's nucleotide sequence