Strain Fitness in Marinobacter adhaerens HP15 around HP15_3822

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3820 and HP15_3821 are separated by 162 nucleotidesHP15_3821 and HP15_3822 are separated by 3 nucleotidesHP15_3822 and HP15_3823 are separated by 238 nucleotidesHP15_3823 and HP15_3824 are separated by 52 nucleotides HP15_3820: HP15_3820 - major facilitator superfamily MFS_1, at 4,046,125 to 4,047,408 _3820 HP15_3821: HP15_3821 - transcriptional regulator, MarR family, at 4,047,571 to 4,047,996 _3821 HP15_3822: HP15_3822 - drug resistance transporter, EmrB/QacA family, at 4,048,000 to 4,049,391 _3822 HP15_3823: HP15_3823 - uncharacterized protein family UPF0016-like protein, at 4,049,630 to 4,050,199 _3823 HP15_3824: HP15_3824 - ErfK/YbiS/YcfS/YnhG family protein, at 4,050,252 to 4,051,298 _3824 Position (kb) 4047 4048 4049 4050Strain fitness (log2 ratio) -2 -1 0 1at 4047.001 kb on + strand, within HP15_3820at 4047.015 kb on + strand, within HP15_3820at 4047.024 kb on + strand, within HP15_3820at 4047.119 kb on - strand, within HP15_3820at 4047.119 kb on - strand, within HP15_3820at 4047.165 kb on + strand, within HP15_3820at 4047.259 kb on - strand, within HP15_3820at 4047.285 kb on - strandat 4047.383 kb on + strandat 4047.715 kb on - strand, within HP15_3821at 4047.715 kb on - strand, within HP15_3821at 4047.774 kb on - strand, within HP15_3821at 4047.776 kb on + strand, within HP15_3821at 4047.776 kb on + strand, within HP15_3821at 4047.784 kb on - strand, within HP15_3821at 4047.896 kb on - strand, within HP15_3821at 4047.934 kb on - strand, within HP15_3821at 4047.975 kb on - strandat 4048.055 kb on + strandat 4048.073 kb on - strandat 4048.093 kb on + strandat 4048.106 kb on + strandat 4048.216 kb on - strand, within HP15_3822at 4048.241 kb on + strand, within HP15_3822at 4048.242 kb on + strand, within HP15_3822at 4048.280 kb on + strand, within HP15_3822at 4048.337 kb on - strand, within HP15_3822at 4048.377 kb on + strand, within HP15_3822at 4048.385 kb on - strand, within HP15_3822at 4048.431 kb on + strand, within HP15_3822at 4048.439 kb on - strand, within HP15_3822at 4048.460 kb on + strand, within HP15_3822at 4048.604 kb on - strand, within HP15_3822at 4048.639 kb on - strand, within HP15_3822at 4048.672 kb on + strand, within HP15_3822at 4048.672 kb on + strand, within HP15_3822at 4048.699 kb on + strand, within HP15_3822at 4048.748 kb on - strand, within HP15_3822at 4048.796 kb on + strand, within HP15_3822at 4048.866 kb on + strand, within HP15_3822at 4048.874 kb on - strand, within HP15_3822at 4048.874 kb on - strand, within HP15_3822at 4048.875 kb on + strand, within HP15_3822at 4048.914 kb on - strand, within HP15_3822at 4048.914 kb on - strand, within HP15_3822at 4048.919 kb on - strand, within HP15_3822at 4048.923 kb on + strand, within HP15_3822at 4048.997 kb on - strand, within HP15_3822at 4049.018 kb on + strand, within HP15_3822at 4049.018 kb on + strand, within HP15_3822at 4049.023 kb on + strand, within HP15_3822at 4049.026 kb on - strand, within HP15_3822at 4049.028 kb on + strand, within HP15_3822at 4049.041 kb on - strand, within HP15_3822at 4049.073 kb on + strand, within HP15_3822at 4049.106 kb on + strand, within HP15_3822at 4049.111 kb on + strand, within HP15_3822at 4049.112 kb on - strand, within HP15_3822at 4049.114 kb on - strand, within HP15_3822at 4049.114 kb on - strand, within HP15_3822at 4049.116 kb on + strand, within HP15_3822at 4049.116 kb on + strand, within HP15_3822at 4049.119 kb on - strand, within HP15_3822at 4049.124 kb on - strand, within HP15_3822at 4049.124 kb on - strand, within HP15_3822at 4049.124 kb on - strand, within HP15_3822at 4049.124 kb on - strand, within HP15_3822at 4049.124 kb on - strand, within HP15_3822at 4049.213 kb on + strand, within HP15_3822at 4049.213 kb on + strand, within HP15_3822at 4049.249 kb on + strand, within HP15_3822at 4049.251 kb on - strand, within HP15_3822at 4049.294 kb on - strandat 4049.299 kb on - strandat 4049.299 kb on - strandat 4049.385 kb on + strandat 4049.385 kb on + strandat 4049.412 kb on - strandat 4049.443 kb on + strandat 4049.451 kb on - strandat 4049.525 kb on - strandat 4049.784 kb on - strand, within HP15_3823at 4049.807 kb on + strand, within HP15_3823at 4049.833 kb on - strand, within HP15_3823at 4049.895 kb on - strand, within HP15_3823at 4049.914 kb on + strand, within HP15_3823at 4049.986 kb on + strand, within HP15_3823at 4050.035 kb on + strand, within HP15_3823at 4050.038 kb on - strand, within HP15_3823at 4050.042 kb on + strand, within HP15_3823at 4050.077 kb on - strand, within HP15_3823at 4050.113 kb on + strand, within HP15_3823at 4050.171 kb on + strandat 4050.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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4,047,001 + HP15_3820 0.68 -1.0
4,047,015 + HP15_3820 0.69 +0.0
4,047,024 + HP15_3820 0.70 +1.5
4,047,119 - HP15_3820 0.77 +0.2
4,047,119 - HP15_3820 0.77 +0.6
4,047,165 + HP15_3820 0.81 +0.8
4,047,259 - HP15_3820 0.88 -1.9
4,047,285 - -0.6
4,047,383 + -0.2
4,047,715 - HP15_3821 0.34 +0.3
4,047,715 - HP15_3821 0.34 +0.2
4,047,774 - HP15_3821 0.48 +0.2
4,047,776 + HP15_3821 0.48 +1.2
4,047,776 + HP15_3821 0.48 +1.7
4,047,784 - HP15_3821 0.50 +0.5
4,047,896 - HP15_3821 0.76 +1.5
4,047,934 - HP15_3821 0.85 +1.2
4,047,975 - +0.5
4,048,055 + +1.4
4,048,073 - -0.6
4,048,093 + -1.9
4,048,106 + -0.2
4,048,216 - HP15_3822 0.16 +0.0
4,048,241 + HP15_3822 0.17 +0.6
4,048,242 + HP15_3822 0.17 +0.6
4,048,280 + HP15_3822 0.20 +1.1
4,048,337 - HP15_3822 0.24 +0.4
4,048,377 + HP15_3822 0.27 -1.2
4,048,385 - HP15_3822 0.28 +0.8
4,048,431 + HP15_3822 0.31 -0.1
4,048,439 - HP15_3822 0.32 +0.8
4,048,460 + HP15_3822 0.33 -0.3
4,048,604 - HP15_3822 0.43 +0.1
4,048,639 - HP15_3822 0.46 -0.2
4,048,672 + HP15_3822 0.48 -1.1
4,048,672 + HP15_3822 0.48 +0.7
4,048,699 + HP15_3822 0.50 +0.4
4,048,748 - HP15_3822 0.54 -0.4
4,048,796 + HP15_3822 0.57 +0.5
4,048,866 + HP15_3822 0.62 -0.2
4,048,874 - HP15_3822 0.63 +1.0
4,048,874 - HP15_3822 0.63 +0.5
4,048,875 + HP15_3822 0.63 +0.2
4,048,914 - HP15_3822 0.66 +0.1
4,048,914 - HP15_3822 0.66 +0.7
4,048,919 - HP15_3822 0.66 -0.0
4,048,923 + HP15_3822 0.66 +0.8
4,048,997 - HP15_3822 0.72 +0.0
4,049,018 + HP15_3822 0.73 +0.3
4,049,018 + HP15_3822 0.73 +0.1
4,049,023 + HP15_3822 0.73 +0.1
4,049,026 - HP15_3822 0.74 +1.4
4,049,028 + HP15_3822 0.74 +0.3
4,049,041 - HP15_3822 0.75 +0.8
4,049,073 + HP15_3822 0.77 -0.7
4,049,106 + HP15_3822 0.79 +0.5
4,049,111 + HP15_3822 0.80 +0.3
4,049,112 - HP15_3822 0.80 +1.3
4,049,114 - HP15_3822 0.80 +0.5
4,049,114 - HP15_3822 0.80 +0.5
4,049,116 + HP15_3822 0.80 +0.2
4,049,116 + HP15_3822 0.80 -0.1
4,049,119 - HP15_3822 0.80 -2.1
4,049,124 - HP15_3822 0.81 +1.7
4,049,124 - HP15_3822 0.81 +0.8
4,049,124 - HP15_3822 0.81 +0.8
4,049,124 - HP15_3822 0.81 +0.7
4,049,124 - HP15_3822 0.81 +0.5
4,049,213 + HP15_3822 0.87 +0.9
4,049,213 + HP15_3822 0.87 +0.1
4,049,249 + HP15_3822 0.90 +0.6
4,049,251 - HP15_3822 0.90 +1.3
4,049,294 - +0.8
4,049,299 - +0.7
4,049,299 - +0.6
4,049,385 + -0.3
4,049,385 + -2.1
4,049,412 - -0.5
4,049,443 + +0.7
4,049,451 - +0.1
4,049,525 - -1.1
4,049,784 - HP15_3823 0.27 -1.4
4,049,807 + HP15_3823 0.31 -0.7
4,049,833 - HP15_3823 0.36 -0.6
4,049,895 - HP15_3823 0.46 +0.1
4,049,914 + HP15_3823 0.50 -1.3
4,049,986 + HP15_3823 0.62 -0.5
4,050,035 + HP15_3823 0.71 -0.2
4,050,038 - HP15_3823 0.72 +0.3
4,050,042 + HP15_3823 0.72 -0.7
4,050,077 - HP15_3823 0.78 +1.2
4,050,113 + HP15_3823 0.85 -0.1
4,050,171 + +0.3
4,050,171 + -0.6

Or see this region's nucleotide sequence