Strain Fitness in Marinobacter adhaerens HP15 around HP15_3791

Experiment: m.b. Benzethonium chloride 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3789 and HP15_3790 are separated by 112 nucleotidesHP15_3790 and HP15_3791 are separated by 11 nucleotidesHP15_3791 and HP15_3792 are separated by 318 nucleotides HP15_3789: HP15_3789 - conserved hypothetical protein, membrane, at 4,010,899 to 4,012,308 _3789 HP15_3790: HP15_3790 - conserved hypothetical protein, at 4,012,421 to 4,012,768 _3790 HP15_3791: HP15_3791 - lipase/esterase, at 4,012,780 to 4,013,655 _3791 HP15_3792: HP15_3792 - D-(-)-3-hydroxybutyrate oligomer hydrolase precursor, at 4,013,974 to 4,016,151 _3792 Position (kb) 4012 4013 4014Strain fitness (log2 ratio) -2 -1 0 1at 4011.811 kb on + strand, within HP15_3789at 4011.824 kb on - strand, within HP15_3789at 4011.840 kb on - strand, within HP15_3789at 4011.842 kb on + strand, within HP15_3789at 4011.935 kb on + strand, within HP15_3789at 4011.935 kb on + strand, within HP15_3789at 4011.935 kb on + strand, within HP15_3789at 4011.943 kb on - strand, within HP15_3789at 4011.943 kb on - strand, within HP15_3789at 4012.021 kb on - strand, within HP15_3789at 4012.242 kb on + strandat 4012.247 kb on + strandat 4012.364 kb on + strandat 4012.394 kb on + strandat 4012.419 kb on + strandat 4012.485 kb on + strand, within HP15_3790at 4012.544 kb on - strand, within HP15_3790at 4012.544 kb on - strand, within HP15_3790at 4012.578 kb on - strand, within HP15_3790at 4012.622 kb on - strand, within HP15_3790at 4012.632 kb on - strand, within HP15_3790at 4012.634 kb on + strand, within HP15_3790at 4012.634 kb on - strand, within HP15_3790at 4012.733 kb on + strand, within HP15_3790at 4012.893 kb on + strand, within HP15_3791at 4012.894 kb on - strand, within HP15_3791at 4012.922 kb on + strand, within HP15_3791at 4013.091 kb on - strand, within HP15_3791at 4013.306 kb on + strand, within HP15_3791at 4013.362 kb on - strand, within HP15_3791at 4013.364 kb on - strand, within HP15_3791at 4013.429 kb on + strand, within HP15_3791at 4013.472 kb on - strand, within HP15_3791at 4013.563 kb on + strand, within HP15_3791at 4013.615 kb on - strandat 4013.658 kb on - strandat 4013.720 kb on - strandat 4013.785 kb on - strandat 4013.877 kb on + strandat 4013.885 kb on - strandat 4013.885 kb on - strandat 4014.010 kb on + strandat 4014.061 kb on - strandat 4014.080 kb on - strandat 4014.085 kb on + strandat 4014.085 kb on + strandat 4014.152 kb on + strandat 4014.162 kb on + strandat 4014.217 kb on + strand, within HP15_3792at 4014.225 kb on - strand, within HP15_3792at 4014.239 kb on - strand, within HP15_3792at 4014.252 kb on + strand, within HP15_3792at 4014.262 kb on - strand, within HP15_3792at 4014.315 kb on + strand, within HP15_3792at 4014.323 kb on - strand, within HP15_3792at 4014.350 kb on + strand, within HP15_3792at 4014.363 kb on + strand, within HP15_3792at 4014.363 kb on + strand, within HP15_3792at 4014.371 kb on - strand, within HP15_3792at 4014.371 kb on - strand, within HP15_3792at 4014.371 kb on - strand, within HP15_3792at 4014.385 kb on - strand, within HP15_3792at 4014.385 kb on - strand, within HP15_3792at 4014.387 kb on + strand, within HP15_3792at 4014.387 kb on + strand, within HP15_3792at 4014.395 kb on - strand, within HP15_3792at 4014.409 kb on + strand, within HP15_3792at 4014.423 kb on + strand, within HP15_3792at 4014.481 kb on + strand, within HP15_3792at 4014.489 kb on - strand, within HP15_3792at 4014.580 kb on + strand, within HP15_3792at 4014.580 kb on + strand, within HP15_3792at 4014.580 kb on + strand, within HP15_3792at 4014.580 kb on + strand, within HP15_3792at 4014.582 kb on + strand, within HP15_3792at 4014.622 kb on - strand, within HP15_3792at 4014.637 kb on + strand, within HP15_3792

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
remove
4,011,811 + HP15_3789 0.65 +0.4
4,011,824 - HP15_3789 0.66 -0.2
4,011,840 - HP15_3789 0.67 +0.2
4,011,842 + HP15_3789 0.67 +1.2
4,011,935 + HP15_3789 0.73 +0.8
4,011,935 + HP15_3789 0.73 +1.3
4,011,935 + HP15_3789 0.73 -0.7
4,011,943 - HP15_3789 0.74 -0.1
4,011,943 - HP15_3789 0.74 +0.7
4,012,021 - HP15_3789 0.80 +0.7
4,012,242 + +0.9
4,012,247 + -1.1
4,012,364 + -2.4
4,012,394 + -0.7
4,012,419 + -2.7
4,012,485 + HP15_3790 0.18 +0.5
4,012,544 - HP15_3790 0.35 +0.1
4,012,544 - HP15_3790 0.35 +0.9
4,012,578 - HP15_3790 0.45 +0.2
4,012,622 - HP15_3790 0.58 -0.2
4,012,632 - HP15_3790 0.61 -0.9
4,012,634 + HP15_3790 0.61 +0.7
4,012,634 - HP15_3790 0.61 -0.7
4,012,733 + HP15_3790 0.90 +1.7
4,012,893 + HP15_3791 0.13 +0.7
4,012,894 - HP15_3791 0.13 +0.2
4,012,922 + HP15_3791 0.16 -0.1
4,013,091 - HP15_3791 0.36 -1.4
4,013,306 + HP15_3791 0.60 +0.1
4,013,362 - HP15_3791 0.66 -0.1
4,013,364 - HP15_3791 0.67 -2.7
4,013,429 + HP15_3791 0.74 -0.2
4,013,472 - HP15_3791 0.79 +0.7
4,013,563 + HP15_3791 0.89 +0.4
4,013,615 - -2.1
4,013,658 - +0.4
4,013,720 - -0.0
4,013,785 - +0.3
4,013,877 + -0.9
4,013,885 - -0.1
4,013,885 - +0.3
4,014,010 + +0.4
4,014,061 - -2.4
4,014,080 - -1.7
4,014,085 + -0.0
4,014,085 + +0.3
4,014,152 + -0.1
4,014,162 + +1.0
4,014,217 + HP15_3792 0.11 -0.5
4,014,225 - HP15_3792 0.12 -2.3
4,014,239 - HP15_3792 0.12 -0.1
4,014,252 + HP15_3792 0.13 -0.9
4,014,262 - HP15_3792 0.13 +0.3
4,014,315 + HP15_3792 0.16 -2.1
4,014,323 - HP15_3792 0.16 +0.3
4,014,350 + HP15_3792 0.17 +0.3
4,014,363 + HP15_3792 0.18 -0.2
4,014,363 + HP15_3792 0.18 +0.4
4,014,371 - HP15_3792 0.18 -0.9
4,014,371 - HP15_3792 0.18 -0.2
4,014,371 - HP15_3792 0.18 -0.6
4,014,385 - HP15_3792 0.19 -0.8
4,014,385 - HP15_3792 0.19 +1.5
4,014,387 + HP15_3792 0.19 -0.1
4,014,387 + HP15_3792 0.19 +0.5
4,014,395 - HP15_3792 0.19 -0.7
4,014,409 + HP15_3792 0.20 -0.1
4,014,423 + HP15_3792 0.21 +0.3
4,014,481 + HP15_3792 0.23 -0.7
4,014,489 - HP15_3792 0.24 -1.3
4,014,580 + HP15_3792 0.28 -0.1
4,014,580 + HP15_3792 0.28 -0.2
4,014,580 + HP15_3792 0.28 -0.6
4,014,580 + HP15_3792 0.28 -0.1
4,014,582 + HP15_3792 0.28 +0.2
4,014,622 - HP15_3792 0.30 +0.9
4,014,637 + HP15_3792 0.30 -0.2

Or see this region's nucleotide sequence