Strain Fitness in Marinobacter adhaerens HP15 around HP15_3626

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3625 and HP15_3626 are separated by 25 nucleotidesHP15_3626 and HP15_3627 are separated by 63 nucleotidesHP15_3627 and HP15_3628 are separated by 20 nucleotidesHP15_3628 and HP15_3629 are separated by 70 nucleotides HP15_3625: HP15_3625 - choline dehydrogenase, at 3,820,662 to 3,822,347 _3625 HP15_3626: HP15_3626 - betaine aldehyde dehydrogenase, at 3,822,373 to 3,823,842 _3626 HP15_3627: HP15_3627 - transcriptional regulator, TetR family, at 3,823,906 to 3,824,499 _3627 HP15_3628: HP15_3628 - hypothetical protein, at 3,824,520 to 3,824,624 _3628 HP15_3629: HP15_3629 - conserved hypothetical protein, at 3,824,695 to 3,824,907 _3629 Position (kb) 3822 3823 3824Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3821.390 kb on + strand, within HP15_3625at 3821.405 kb on + strand, within HP15_3625at 3821.509 kb on + strand, within HP15_3625at 3821.527 kb on + strand, within HP15_3625at 3821.552 kb on + strand, within HP15_3625at 3821.560 kb on - strand, within HP15_3625at 3821.690 kb on + strand, within HP15_3625at 3821.690 kb on + strand, within HP15_3625at 3821.698 kb on - strand, within HP15_3625at 3821.698 kb on - strand, within HP15_3625at 3821.698 kb on - strand, within HP15_3625at 3821.705 kb on - strand, within HP15_3625at 3821.742 kb on + strand, within HP15_3625at 3821.781 kb on + strand, within HP15_3625at 3821.787 kb on - strand, within HP15_3625at 3821.870 kb on - strand, within HP15_3625at 3821.877 kb on - strand, within HP15_3625at 3821.877 kb on - strand, within HP15_3625at 3821.920 kb on + strand, within HP15_3625at 3821.958 kb on + strand, within HP15_3625at 3821.966 kb on - strand, within HP15_3625at 3821.967 kb on - strand, within HP15_3625at 3822.054 kb on + strand, within HP15_3625at 3822.062 kb on - strand, within HP15_3625at 3822.087 kb on + strand, within HP15_3625at 3822.101 kb on + strand, within HP15_3625at 3822.123 kb on + strand, within HP15_3625at 3822.184 kb on + strandat 3822.189 kb on + strandat 3822.192 kb on - strandat 3822.251 kb on + strandat 3822.290 kb on + strandat 3822.426 kb on - strandat 3822.598 kb on + strand, within HP15_3626at 3822.814 kb on + strand, within HP15_3626at 3822.960 kb on - strand, within HP15_3626at 3822.960 kb on - strand, within HP15_3626at 3823.007 kb on + strand, within HP15_3626at 3823.007 kb on + strand, within HP15_3626at 3823.007 kb on + strand, within HP15_3626at 3823.060 kb on + strand, within HP15_3626at 3823.121 kb on - strand, within HP15_3626at 3823.237 kb on + strand, within HP15_3626at 3823.339 kb on + strand, within HP15_3626at 3823.339 kb on + strand, within HP15_3626at 3823.347 kb on - strand, within HP15_3626at 3823.347 kb on - strand, within HP15_3626at 3823.379 kb on + strand, within HP15_3626at 3823.379 kb on + strand, within HP15_3626at 3823.477 kb on - strand, within HP15_3626at 3823.569 kb on + strand, within HP15_3626at 3823.577 kb on - strand, within HP15_3626at 3823.577 kb on - strand, within HP15_3626at 3823.577 kb on - strand, within HP15_3626at 3823.577 kb on - strand, within HP15_3626at 3823.649 kb on - strand, within HP15_3626at 3823.649 kb on - strand, within HP15_3626at 3823.730 kb on - strandat 3823.738 kb on + strandat 3823.739 kb on + strandat 3823.821 kb on - strandat 3823.886 kb on - strandat 3823.921 kb on + strandat 3823.921 kb on + strandat 3823.990 kb on + strand, within HP15_3627at 3824.188 kb on - strand, within HP15_3627at 3824.332 kb on - strand, within HP15_3627at 3824.336 kb on - strand, within HP15_3627at 3824.374 kb on + strand, within HP15_3627at 3824.382 kb on - strand, within HP15_3627at 3824.408 kb on + strand, within HP15_3627at 3824.408 kb on - strand, within HP15_3627at 3824.420 kb on + strand, within HP15_3627at 3824.468 kb on - strandat 3824.613 kb on + strand, within HP15_3628at 3824.723 kb on + strand, within HP15_3629at 3824.731 kb on - strand, within HP15_3629at 3824.731 kb on - strand, within HP15_3629at 3824.731 kb on - strand, within HP15_3629at 3824.789 kb on - strand, within HP15_3629

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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3,821,390 + HP15_3625 0.43 +1.1
3,821,405 + HP15_3625 0.44 +1.0
3,821,509 + HP15_3625 0.50 +0.5
3,821,527 + HP15_3625 0.51 -0.2
3,821,552 + HP15_3625 0.53 -0.8
3,821,560 - HP15_3625 0.53 -0.1
3,821,690 + HP15_3625 0.61 -0.1
3,821,690 + HP15_3625 0.61 -0.7
3,821,698 - HP15_3625 0.61 +0.9
3,821,698 - HP15_3625 0.61 +0.4
3,821,698 - HP15_3625 0.61 -0.3
3,821,705 - HP15_3625 0.62 +0.7
3,821,742 + HP15_3625 0.64 +0.3
3,821,781 + HP15_3625 0.66 +0.2
3,821,787 - HP15_3625 0.67 -0.6
3,821,870 - HP15_3625 0.72 -1.0
3,821,877 - HP15_3625 0.72 -0.7
3,821,877 - HP15_3625 0.72 -0.1
3,821,920 + HP15_3625 0.75 -0.0
3,821,958 + HP15_3625 0.77 -0.3
3,821,966 - HP15_3625 0.77 -0.7
3,821,967 - HP15_3625 0.77 +0.9
3,822,054 + HP15_3625 0.83 +0.2
3,822,062 - HP15_3625 0.83 +0.4
3,822,087 + HP15_3625 0.85 +0.3
3,822,101 + HP15_3625 0.85 -0.9
3,822,123 + HP15_3625 0.87 +0.4
3,822,184 + +0.2
3,822,189 + +0.0
3,822,192 - +1.5
3,822,251 + -0.6
3,822,290 + +0.3
3,822,426 - +1.9
3,822,598 + HP15_3626 0.15 -0.3
3,822,814 + HP15_3626 0.30 -0.2
3,822,960 - HP15_3626 0.40 +2.2
3,822,960 - HP15_3626 0.40 +1.4
3,823,007 + HP15_3626 0.43 -0.2
3,823,007 + HP15_3626 0.43 +0.6
3,823,007 + HP15_3626 0.43 -0.5
3,823,060 + HP15_3626 0.47 +0.2
3,823,121 - HP15_3626 0.51 +0.9
3,823,237 + HP15_3626 0.59 -0.5
3,823,339 + HP15_3626 0.66 +0.3
3,823,339 + HP15_3626 0.66 -0.6
3,823,347 - HP15_3626 0.66 +2.5
3,823,347 - HP15_3626 0.66 +1.6
3,823,379 + HP15_3626 0.68 -1.4
3,823,379 + HP15_3626 0.68 +0.1
3,823,477 - HP15_3626 0.75 +2.9
3,823,569 + HP15_3626 0.81 +0.3
3,823,577 - HP15_3626 0.82 +1.6
3,823,577 - HP15_3626 0.82 +2.3
3,823,577 - HP15_3626 0.82 +1.7
3,823,577 - HP15_3626 0.82 +1.2
3,823,649 - HP15_3626 0.87 +1.9
3,823,649 - HP15_3626 0.87 +0.9
3,823,730 - +1.4
3,823,738 + +0.9
3,823,739 + +0.1
3,823,821 - +1.5
3,823,886 - +0.1
3,823,921 + -1.2
3,823,921 + -0.9
3,823,990 + HP15_3627 0.14 -1.1
3,824,188 - HP15_3627 0.47 +1.0
3,824,332 - HP15_3627 0.72 +0.7
3,824,336 - HP15_3627 0.72 +0.5
3,824,374 + HP15_3627 0.79 -1.5
3,824,382 - HP15_3627 0.80 +1.9
3,824,408 + HP15_3627 0.85 -0.1
3,824,408 - HP15_3627 0.85 -0.1
3,824,420 + HP15_3627 0.87 -0.1
3,824,468 - -2.5
3,824,613 + HP15_3628 0.89 +2.0
3,824,723 + HP15_3629 0.13 +0.5
3,824,731 - HP15_3629 0.17 +0.5
3,824,731 - HP15_3629 0.17 +1.2
3,824,731 - HP15_3629 0.17 +0.0
3,824,789 - HP15_3629 0.44 +0.8

Or see this region's nucleotide sequence