Strain Fitness in Marinobacter adhaerens HP15 around HP15_3368

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3367 and HP15_3368 are separated by 216 nucleotidesHP15_3368 and HP15_3369 are separated by 194 nucleotidesHP15_3369 and HP15_3370 are separated by 22 nucleotides HP15_3367: HP15_3367 - twin-arginine translocation pathway signal, at 3,533,526 to 3,535,268 _3367 HP15_3368: HP15_3368 - membrane protein containing DUF1282, at 3,535,485 to 3,536,096 _3368 HP15_3369: HP15_3369 - glutathione S-transferase-like protein, at 3,536,291 to 3,536,863 _3369 HP15_3370: HP15_3370 - alanine dehydrogenase, at 3,536,886 to 3,538,004 _3370 Position (kb) 3535 3536 3537Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3534.509 kb on - strand, within HP15_3367at 3534.655 kb on - strand, within HP15_3367at 3534.662 kb on + strand, within HP15_3367at 3534.760 kb on + strand, within HP15_3367at 3534.873 kb on + strand, within HP15_3367at 3534.873 kb on + strand, within HP15_3367at 3534.881 kb on - strand, within HP15_3367at 3534.938 kb on - strand, within HP15_3367at 3534.948 kb on + strand, within HP15_3367at 3534.968 kb on + strand, within HP15_3367at 3534.990 kb on + strand, within HP15_3367at 3535.003 kb on - strand, within HP15_3367at 3535.027 kb on + strand, within HP15_3367at 3535.095 kb on - strandat 3535.096 kb on - strandat 3535.134 kb on - strandat 3535.136 kb on + strandat 3535.142 kb on + strandat 3535.142 kb on + strandat 3535.150 kb on - strandat 3535.163 kb on + strandat 3535.173 kb on + strandat 3535.173 kb on + strandat 3535.173 kb on + strandat 3535.173 kb on + strandat 3535.173 kb on + strandat 3535.173 kb on + strandat 3535.181 kb on - strandat 3535.181 kb on - strandat 3535.181 kb on - strandat 3535.186 kb on - strandat 3535.195 kb on - strandat 3535.222 kb on + strandat 3535.309 kb on + strandat 3535.317 kb on - strandat 3535.318 kb on - strandat 3535.502 kb on - strandat 3535.687 kb on + strand, within HP15_3368at 3535.705 kb on + strand, within HP15_3368at 3535.705 kb on + strand, within HP15_3368at 3535.705 kb on + strand, within HP15_3368at 3535.705 kb on + strand, within HP15_3368at 3535.713 kb on - strand, within HP15_3368at 3535.713 kb on - strand, within HP15_3368at 3535.731 kb on + strand, within HP15_3368at 3535.731 kb on + strand, within HP15_3368at 3535.731 kb on + strand, within HP15_3368at 3535.739 kb on - strand, within HP15_3368at 3535.749 kb on - strand, within HP15_3368at 3535.760 kb on + strand, within HP15_3368at 3535.768 kb on - strand, within HP15_3368at 3535.770 kb on + strand, within HP15_3368at 3535.825 kb on + strand, within HP15_3368at 3535.825 kb on + strand, within HP15_3368at 3535.825 kb on + strand, within HP15_3368at 3535.833 kb on - strand, within HP15_3368at 3535.867 kb on - strand, within HP15_3368at 3535.893 kb on + strand, within HP15_3368at 3536.083 kb on + strandat 3536.290 kb on + strandat 3536.305 kb on + strandat 3536.403 kb on - strand, within HP15_3369at 3536.469 kb on - strand, within HP15_3369at 3536.609 kb on - strand, within HP15_3369at 3536.758 kb on + strand, within HP15_3369at 3536.820 kb on - strandat 3536.855 kb on - strandat 3536.902 kb on + strandat 3536.910 kb on - strandat 3536.922 kb on - strandat 3536.922 kb on - strandat 3536.922 kb on - strandat 3536.991 kb on - strandat 3536.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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3,534,509 - HP15_3367 0.56 -0.7
3,534,655 - HP15_3367 0.65 +1.3
3,534,662 + HP15_3367 0.65 +0.1
3,534,760 + HP15_3367 0.71 -0.7
3,534,873 + HP15_3367 0.77 -0.5
3,534,873 + HP15_3367 0.77 +1.0
3,534,881 - HP15_3367 0.78 -0.0
3,534,938 - HP15_3367 0.81 +0.0
3,534,948 + HP15_3367 0.82 -0.5
3,534,968 + HP15_3367 0.83 +0.2
3,534,990 + HP15_3367 0.84 +0.3
3,535,003 - HP15_3367 0.85 -1.9
3,535,027 + HP15_3367 0.86 +0.4
3,535,095 - +1.6
3,535,096 - -0.3
3,535,134 - -0.7
3,535,136 + -1.5
3,535,142 + +0.8
3,535,142 + -0.9
3,535,150 - -0.2
3,535,163 + +1.5
3,535,173 + -0.6
3,535,173 + -1.2
3,535,173 + +0.1
3,535,173 + +0.1
3,535,173 + +0.5
3,535,173 + +0.4
3,535,181 - +0.2
3,535,181 - -1.1
3,535,181 - +0.2
3,535,186 - -1.0
3,535,195 - +0.1
3,535,222 + +0.9
3,535,309 + +0.8
3,535,317 - +0.0
3,535,318 - +0.3
3,535,502 - +0.2
3,535,687 + HP15_3368 0.33 +1.6
3,535,705 + HP15_3368 0.36 +0.3
3,535,705 + HP15_3368 0.36 +0.8
3,535,705 + HP15_3368 0.36 +0.1
3,535,705 + HP15_3368 0.36 +0.1
3,535,713 - HP15_3368 0.37 +0.3
3,535,713 - HP15_3368 0.37 -1.1
3,535,731 + HP15_3368 0.40 -2.5
3,535,731 + HP15_3368 0.40 +1.4
3,535,731 + HP15_3368 0.40 +0.5
3,535,739 - HP15_3368 0.42 -0.0
3,535,749 - HP15_3368 0.43 +0.7
3,535,760 + HP15_3368 0.45 -0.6
3,535,768 - HP15_3368 0.46 +0.3
3,535,770 + HP15_3368 0.47 -0.6
3,535,825 + HP15_3368 0.56 +0.1
3,535,825 + HP15_3368 0.56 +1.2
3,535,825 + HP15_3368 0.56 +2.2
3,535,833 - HP15_3368 0.57 +1.4
3,535,867 - HP15_3368 0.62 +0.3
3,535,893 + HP15_3368 0.67 +0.4
3,536,083 + -1.5
3,536,290 + +0.0
3,536,305 + -0.8
3,536,403 - HP15_3369 0.20 +0.1
3,536,469 - HP15_3369 0.31 -2.8
3,536,609 - HP15_3369 0.55 +0.8
3,536,758 + HP15_3369 0.82 -0.2
3,536,820 - +0.0
3,536,855 - -0.3
3,536,902 + +0.7
3,536,910 - +0.4
3,536,922 - +0.6
3,536,922 - +0.2
3,536,922 - -0.9
3,536,991 - -0.3
3,536,991 - -0.4

Or see this region's nucleotide sequence