Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3250 and HP15_3251 overlap by 1 nucleotides HP15_3251 and HP15_3252 are separated by 63 nucleotides
HP15_3250: HP15_3250 - cyclopropane-fatty-acyl-phospholipid synthase, at 3,403,894 to 3,405,207
_3250
HP15_3251: HP15_3251 - geranylgeranyl reductase, at 3,405,207 to 3,406,331
_3251
HP15_3252: HP15_3252 - alkaline phosphatase-like protein, at 3,406,395 to 3,408,119
_3252
Position (kb)
3405
3406
3407 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3404.245 kb on - strand, within HP15_3250 at 3404.283 kb on + strand, within HP15_3250 at 3404.348 kb on - strand, within HP15_3250 at 3404.357 kb on + strand, within HP15_3250 at 3404.415 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.455 kb on - strand, within HP15_3250 at 3404.506 kb on - strand, within HP15_3250 at 3404.506 kb on - strand, within HP15_3250 at 3404.632 kb on - strand, within HP15_3250 at 3404.819 kb on + strand, within HP15_3250 at 3404.946 kb on - strand, within HP15_3250 at 3404.972 kb on - strand, within HP15_3250 at 3404.976 kb on + strand, within HP15_3250 at 3404.984 kb on - strand, within HP15_3250 at 3405.124 kb on + strand at 3405.154 kb on + strand at 3405.204 kb on - strand at 3405.278 kb on - strand at 3405.324 kb on + strand, within HP15_3251 at 3405.332 kb on - strand, within HP15_3251 at 3405.347 kb on - strand, within HP15_3251 at 3405.347 kb on - strand, within HP15_3251 at 3405.351 kb on - strand, within HP15_3251 at 3405.367 kb on - strand, within HP15_3251 at 3405.498 kb on - strand, within HP15_3251 at 3405.565 kb on + strand, within HP15_3251 at 3405.615 kb on - strand, within HP15_3251 at 3405.627 kb on - strand, within HP15_3251 at 3405.652 kb on - strand, within HP15_3251 at 3405.751 kb on + strand, within HP15_3251 at 3405.800 kb on + strand, within HP15_3251 at 3405.802 kb on - strand, within HP15_3251 at 3405.848 kb on + strand, within HP15_3251 at 3405.877 kb on - strand, within HP15_3251 at 3405.924 kb on + strand, within HP15_3251 at 3405.924 kb on + strand, within HP15_3251 at 3405.937 kb on - strand, within HP15_3251 at 3405.959 kb on - strand, within HP15_3251 at 3405.973 kb on - strand, within HP15_3251 at 3406.032 kb on - strand, within HP15_3251 at 3406.128 kb on - strand, within HP15_3251 at 3406.218 kb on + strand, within HP15_3251 at 3406.227 kb on + strand at 3406.291 kb on - strand at 3406.428 kb on + strand at 3406.431 kb on - strand at 3406.436 kb on - strand at 3406.436 kb on - strand at 3406.469 kb on + strand at 3406.634 kb on - strand, within HP15_3252 at 3406.787 kb on + strand, within HP15_3252 at 3406.795 kb on - strand, within HP15_3252 at 3406.795 kb on - strand, within HP15_3252 at 3406.835 kb on + strand, within HP15_3252 at 3406.868 kb on + strand, within HP15_3252 at 3406.868 kb on + strand, within HP15_3252 at 3406.876 kb on - strand, within HP15_3252 at 3406.876 kb on - strand, within HP15_3252 at 3406.876 kb on - strand, within HP15_3252 at 3406.878 kb on + strand, within HP15_3252 at 3406.944 kb on - strand, within HP15_3252 at 3406.971 kb on + strand, within HP15_3252 at 3407.085 kb on + strand, within HP15_3252 at 3407.211 kb on + strand, within HP15_3252 at 3407.211 kb on + strand, within HP15_3252
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 3,404,245 - HP15_3250 0.27 +0.6 3,404,283 + HP15_3250 0.30 +0.2 3,404,348 - HP15_3250 0.35 +0.4 3,404,357 + HP15_3250 0.35 -0.9 3,404,415 + HP15_3250 0.40 +1.1 3,404,447 + HP15_3250 0.42 +0.1 3,404,447 + HP15_3250 0.42 +0.3 3,404,447 + HP15_3250 0.42 +0.3 3,404,455 - HP15_3250 0.43 +0.8 3,404,506 - HP15_3250 0.47 +0.1 3,404,506 - HP15_3250 0.47 +0.0 3,404,632 - HP15_3250 0.56 +0.6 3,404,819 + HP15_3250 0.70 +0.8 3,404,946 - HP15_3250 0.80 -1.5 3,404,972 - HP15_3250 0.82 -0.6 3,404,976 + HP15_3250 0.82 -0.1 3,404,984 - HP15_3250 0.83 -0.2 3,405,124 + -1.4 3,405,154 + +1.9 3,405,204 - +0.5 3,405,278 - +0.3 3,405,324 + HP15_3251 0.10 +0.7 3,405,332 - HP15_3251 0.11 +0.8 3,405,347 - HP15_3251 0.12 +0.1 3,405,347 - HP15_3251 0.12 +0.0 3,405,351 - HP15_3251 0.13 +0.4 3,405,367 - HP15_3251 0.14 +0.4 3,405,498 - HP15_3251 0.26 +0.1 3,405,565 + HP15_3251 0.32 -0.1 3,405,615 - HP15_3251 0.36 -1.7 3,405,627 - HP15_3251 0.37 +0.9 3,405,652 - HP15_3251 0.40 +0.5 3,405,751 + HP15_3251 0.48 -0.3 3,405,800 + HP15_3251 0.53 -0.3 3,405,802 - HP15_3251 0.53 +0.5 3,405,848 + HP15_3251 0.57 +0.5 3,405,877 - HP15_3251 0.60 +0.8 3,405,924 + HP15_3251 0.64 +1.2 3,405,924 + HP15_3251 0.64 +0.4 3,405,937 - HP15_3251 0.65 +0.5 3,405,959 - HP15_3251 0.67 +0.6 3,405,973 - HP15_3251 0.68 +0.3 3,406,032 - HP15_3251 0.73 +0.4 3,406,128 - HP15_3251 0.82 -0.4 3,406,218 + HP15_3251 0.90 +0.7 3,406,227 + +0.3 3,406,291 - -0.4 3,406,428 + +0.9 3,406,431 - -0.5 3,406,436 - +0.3 3,406,436 - +0.4 3,406,469 + -0.3 3,406,634 - HP15_3252 0.14 -2.4 3,406,787 + HP15_3252 0.23 +0.2 3,406,795 - HP15_3252 0.23 -0.3 3,406,795 - HP15_3252 0.23 +0.7 3,406,835 + HP15_3252 0.26 -0.5 3,406,868 + HP15_3252 0.27 +0.5 3,406,868 + HP15_3252 0.27 +0.1 3,406,876 - HP15_3252 0.28 +0.3 3,406,876 - HP15_3252 0.28 +0.0 3,406,876 - HP15_3252 0.28 -0.8 3,406,878 + HP15_3252 0.28 +1.6 3,406,944 - HP15_3252 0.32 -0.0 3,406,971 + HP15_3252 0.33 -0.2 3,407,085 + HP15_3252 0.40 -0.6 3,407,211 + HP15_3252 0.47 -1.3 3,407,211 + HP15_3252 0.47 +0.1
Or see this region's nucleotide sequence