Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3175 and HP15_3176 overlap by 14 nucleotides HP15_3176 and HP15_3177 are separated by 31 nucleotides HP15_3177 and HP15_3178 are separated by 70 nucleotides
HP15_3175: HP15_3175 - ABC-3 protein, at 3,328,963 to 3,329,736
_3175
HP15_3176: HP15_3176 - periplasmic solute binding protein, at 3,329,723 to 3,330,613
_3176
HP15_3177: HP15_3177 - conserved hypothetical protein, secreted, at 3,330,645 to 3,331,766
_3177
HP15_3178: HP15_3178 - conserved hypothetical protein, at 3,331,837 to 3,333,069
_3178
Position (kb)
3330
3331
3332 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3329.686 kb on + strand at 3329.688 kb on + strand at 3329.880 kb on + strand, within HP15_3176 at 3329.888 kb on - strand, within HP15_3176 at 3329.940 kb on + strand, within HP15_3176 at 3330.021 kb on - strand, within HP15_3176 at 3330.023 kb on + strand, within HP15_3176 at 3330.031 kb on - strand, within HP15_3176 at 3330.031 kb on - strand, within HP15_3176 at 3330.031 kb on - strand, within HP15_3176 at 3330.063 kb on - strand, within HP15_3176 at 3330.079 kb on + strand, within HP15_3176 at 3330.079 kb on + strand, within HP15_3176 at 3330.097 kb on + strand, within HP15_3176 at 3330.110 kb on - strand, within HP15_3176 at 3330.110 kb on - strand, within HP15_3176 at 3330.110 kb on - strand, within HP15_3176 at 3330.121 kb on + strand, within HP15_3176 at 3330.204 kb on - strand, within HP15_3176 at 3330.232 kb on + strand, within HP15_3176 at 3330.240 kb on - strand, within HP15_3176 at 3330.243 kb on + strand, within HP15_3176 at 3330.243 kb on + strand, within HP15_3176 at 3330.461 kb on - strand, within HP15_3176 at 3330.512 kb on - strand, within HP15_3176 at 3330.594 kb on - strand at 3330.677 kb on + strand at 3330.685 kb on - strand at 3330.692 kb on - strand at 3330.692 kb on - strand at 3330.780 kb on + strand, within HP15_3177 at 3330.901 kb on - strand, within HP15_3177 at 3331.178 kb on + strand, within HP15_3177 at 3331.218 kb on + strand, within HP15_3177 at 3331.218 kb on + strand, within HP15_3177 at 3331.226 kb on - strand, within HP15_3177 at 3331.260 kb on - strand, within HP15_3177 at 3331.280 kb on - strand at 3331.299 kb on + strand, within HP15_3177 at 3331.314 kb on + strand, within HP15_3177 at 3331.561 kb on + strand, within HP15_3177 at 3331.569 kb on - strand, within HP15_3177 at 3331.571 kb on - strand, within HP15_3177 at 3331.593 kb on - strand, within HP15_3177 at 3331.595 kb on + strand, within HP15_3177 at 3331.603 kb on - strand, within HP15_3177 at 3331.610 kb on + strand, within HP15_3177 at 3331.630 kb on - strand, within HP15_3177 at 3331.728 kb on - strand at 3331.772 kb on - strand at 3331.772 kb on - strand at 3331.825 kb on + strand at 3331.971 kb on - strand, within HP15_3178 at 3332.043 kb on - strand, within HP15_3178 at 3332.061 kb on - strand, within HP15_3178 at 3332.066 kb on - strand, within HP15_3178 at 3332.093 kb on + strand, within HP15_3178 at 3332.109 kb on + strand, within HP15_3178 at 3332.161 kb on - strand, within HP15_3178 at 3332.163 kb on + strand, within HP15_3178 at 3332.166 kb on - strand, within HP15_3178 at 3332.173 kb on + strand, within HP15_3178 at 3332.173 kb on + strand, within HP15_3178 at 3332.181 kb on - strand, within HP15_3178 at 3332.181 kb on - strand, within HP15_3178 at 3332.181 kb on - strand, within HP15_3178 at 3332.190 kb on + strand, within HP15_3178 at 3332.201 kb on + strand, within HP15_3178 at 3332.268 kb on + strand, within HP15_3178 at 3332.289 kb on + strand, within HP15_3178 at 3332.302 kb on - strand, within HP15_3178 at 3332.303 kb on + strand, within HP15_3178 at 3332.313 kb on + strand, within HP15_3178 at 3332.329 kb on - strand, within HP15_3178 at 3332.357 kb on + strand, within HP15_3178 at 3332.406 kb on + strand, within HP15_3178 at 3332.459 kb on - strand, within HP15_3178 at 3332.609 kb on + strand, within HP15_3178 at 3332.669 kb on - strand, within HP15_3178 at 3332.758 kb on - strand, within HP15_3178
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 3,329,686 + +0.5 3,329,688 + -1.1 3,329,880 + HP15_3176 0.18 +0.2 3,329,888 - HP15_3176 0.19 -1.1 3,329,940 + HP15_3176 0.24 +1.5 3,330,021 - HP15_3176 0.33 -1.5 3,330,023 + HP15_3176 0.34 -0.3 3,330,031 - HP15_3176 0.35 +0.6 3,330,031 - HP15_3176 0.35 -0.8 3,330,031 - HP15_3176 0.35 -0.3 3,330,063 - HP15_3176 0.38 -0.1 3,330,079 + HP15_3176 0.40 +0.3 3,330,079 + HP15_3176 0.40 +0.5 3,330,097 + HP15_3176 0.42 -0.1 3,330,110 - HP15_3176 0.43 +0.4 3,330,110 - HP15_3176 0.43 -0.7 3,330,110 - HP15_3176 0.43 -1.7 3,330,121 + HP15_3176 0.45 +0.5 3,330,204 - HP15_3176 0.54 +0.3 3,330,232 + HP15_3176 0.57 -2.9 3,330,240 - HP15_3176 0.58 -0.1 3,330,243 + HP15_3176 0.58 +1.1 3,330,243 + HP15_3176 0.58 +1.0 3,330,461 - HP15_3176 0.83 +0.2 3,330,512 - HP15_3176 0.89 +0.9 3,330,594 - -0.5 3,330,677 + -1.0 3,330,685 - -0.5 3,330,692 - +0.1 3,330,692 - -1.1 3,330,780 + HP15_3177 0.12 -2.7 3,330,901 - HP15_3177 0.23 +0.5 3,331,178 + HP15_3177 0.48 +1.0 3,331,218 + HP15_3177 0.51 -0.4 3,331,218 + HP15_3177 0.51 -0.2 3,331,226 - HP15_3177 0.52 +0.3 3,331,260 - HP15_3177 0.55 -2.1 3,331,280 - +0.9 3,331,299 + HP15_3177 0.58 -0.5 3,331,314 + HP15_3177 0.60 -0.1 3,331,561 + HP15_3177 0.82 +1.1 3,331,569 - HP15_3177 0.82 -0.3 3,331,571 - HP15_3177 0.83 +0.6 3,331,593 - HP15_3177 0.84 -0.9 3,331,595 + HP15_3177 0.85 +0.1 3,331,603 - HP15_3177 0.85 -1.3 3,331,610 + HP15_3177 0.86 -2.1 3,331,630 - HP15_3177 0.88 +0.2 3,331,728 - +0.8 3,331,772 - -0.5 3,331,772 - -0.4 3,331,825 + +0.5 3,331,971 - HP15_3178 0.11 +0.3 3,332,043 - HP15_3178 0.17 +0.4 3,332,061 - HP15_3178 0.18 -0.5 3,332,066 - HP15_3178 0.19 +0.1 3,332,093 + HP15_3178 0.21 -0.3 3,332,109 + HP15_3178 0.22 -0.7 3,332,161 - HP15_3178 0.26 +1.6 3,332,163 + HP15_3178 0.26 +0.2 3,332,166 - HP15_3178 0.27 -1.1 3,332,173 + HP15_3178 0.27 -0.2 3,332,173 + HP15_3178 0.27 +0.3 3,332,181 - HP15_3178 0.28 -0.1 3,332,181 - HP15_3178 0.28 -0.1 3,332,181 - HP15_3178 0.28 -2.6 3,332,190 + HP15_3178 0.29 -1.7 3,332,201 + HP15_3178 0.30 +0.0 3,332,268 + HP15_3178 0.35 -0.1 3,332,289 + HP15_3178 0.37 +0.4 3,332,302 - HP15_3178 0.38 -0.7 3,332,303 + HP15_3178 0.38 +0.7 3,332,313 + HP15_3178 0.39 +0.1 3,332,329 - HP15_3178 0.40 +1.2 3,332,357 + HP15_3178 0.42 +0.2 3,332,406 + HP15_3178 0.46 -1.8 3,332,459 - HP15_3178 0.50 -2.0 3,332,609 + HP15_3178 0.63 +0.3 3,332,669 - HP15_3178 0.67 -1.6 3,332,758 - HP15_3178 0.75 -0.3
Or see this region's nucleotide sequence