Strain Fitness in Marinobacter adhaerens HP15 around HP15_2645

Experiment: m.b. Benzethonium chloride 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2643 and HP15_2644 are separated by 17 nucleotidesHP15_2644 and HP15_2645 are separated by 96 nucleotidesHP15_2645 and HP15_2646 are separated by 85 nucleotides HP15_2643: HP15_2643 - conserved hypothetical protein, at 2,792,779 to 2,793,444 _2643 HP15_2644: HP15_2644 - permease, at 2,793,462 to 2,794,238 _2644 HP15_2645: HP15_2645 - methyl-accepting chemotaxis protein, at 2,794,335 to 2,796,212 _2645 HP15_2646: HP15_2646 - radical SAM domain protein, at 2,796,298 to 2,797,359 _2646 Position (kb) 2794 2795 2796 2797Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2793.511 kb on + strandat 2793.615 kb on - strand, within HP15_2644at 2793.671 kb on + strand, within HP15_2644at 2793.679 kb on + strand, within HP15_2644at 2793.734 kb on - strand, within HP15_2644at 2793.734 kb on - strand, within HP15_2644at 2793.747 kb on + strand, within HP15_2644at 2793.802 kb on - strand, within HP15_2644at 2793.870 kb on - strand, within HP15_2644at 2794.049 kb on - strand, within HP15_2644at 2794.181 kb on - strandat 2794.350 kb on + strandat 2794.389 kb on + strandat 2794.442 kb on - strandat 2794.485 kb on + strandat 2794.493 kb on - strandat 2794.613 kb on + strand, within HP15_2645at 2794.677 kb on + strand, within HP15_2645at 2794.702 kb on + strand, within HP15_2645at 2794.734 kb on - strand, within HP15_2645at 2794.776 kb on - strand, within HP15_2645at 2794.959 kb on + strand, within HP15_2645at 2795.129 kb on + strand, within HP15_2645at 2795.185 kb on + strand, within HP15_2645at 2795.250 kb on - strand, within HP15_2645at 2795.250 kb on - strand, within HP15_2645at 2795.287 kb on + strand, within HP15_2645at 2795.484 kb on - strand, within HP15_2645at 2795.535 kb on - strand, within HP15_2645at 2795.562 kb on + strand, within HP15_2645at 2795.570 kb on - strand, within HP15_2645at 2795.644 kb on - strand, within HP15_2645at 2795.726 kb on - strand, within HP15_2645at 2795.928 kb on + strand, within HP15_2645at 2795.943 kb on + strand, within HP15_2645at 2796.053 kb on - strandat 2796.182 kb on + strandat 2796.186 kb on - strandat 2796.207 kb on + strandat 2796.219 kb on + strandat 2796.227 kb on - strandat 2796.243 kb on + strandat 2796.316 kb on + strandat 2796.345 kb on + strandat 2796.385 kb on - strandat 2796.489 kb on - strand, within HP15_2646at 2796.545 kb on + strand, within HP15_2646at 2796.645 kb on - strand, within HP15_2646at 2796.649 kb on + strand, within HP15_2646at 2796.806 kb on + strand, within HP15_2646at 2796.840 kb on + strand, within HP15_2646at 2796.840 kb on + strand, within HP15_2646at 2796.848 kb on - strand, within HP15_2646at 2796.876 kb on - strand, within HP15_2646at 2796.927 kb on + strand, within HP15_2646at 2796.945 kb on + strand, within HP15_2646at 2797.139 kb on + strand, within HP15_2646at 2797.147 kb on - strand, within HP15_2646at 2797.187 kb on + strand, within HP15_2646

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
remove
2,793,511 + -1.2
2,793,615 - HP15_2644 0.20 -1.0
2,793,671 + HP15_2644 0.27 +0.2
2,793,679 + HP15_2644 0.28 -1.3
2,793,734 - HP15_2644 0.35 +0.6
2,793,734 - HP15_2644 0.35 +0.0
2,793,747 + HP15_2644 0.37 +0.6
2,793,802 - HP15_2644 0.44 -0.1
2,793,870 - HP15_2644 0.53 -1.5
2,794,049 - HP15_2644 0.76 +0.3
2,794,181 - +0.2
2,794,350 + -1.1
2,794,389 + +0.1
2,794,442 - -1.0
2,794,485 + +0.1
2,794,493 - -1.2
2,794,613 + HP15_2645 0.15 +0.4
2,794,677 + HP15_2645 0.18 -0.3
2,794,702 + HP15_2645 0.20 -0.1
2,794,734 - HP15_2645 0.21 -2.9
2,794,776 - HP15_2645 0.23 -1.2
2,794,959 + HP15_2645 0.33 +0.6
2,795,129 + HP15_2645 0.42 +0.0
2,795,185 + HP15_2645 0.45 -0.7
2,795,250 - HP15_2645 0.49 +0.3
2,795,250 - HP15_2645 0.49 -0.1
2,795,287 + HP15_2645 0.51 -1.6
2,795,484 - HP15_2645 0.61 -0.0
2,795,535 - HP15_2645 0.64 -0.3
2,795,562 + HP15_2645 0.65 +0.2
2,795,570 - HP15_2645 0.66 +0.4
2,795,644 - HP15_2645 0.70 -0.6
2,795,726 - HP15_2645 0.74 -0.8
2,795,928 + HP15_2645 0.85 -0.1
2,795,943 + HP15_2645 0.86 +0.1
2,796,053 - +0.4
2,796,182 + -0.9
2,796,186 - -0.1
2,796,207 + -1.7
2,796,219 + -0.9
2,796,227 - +0.1
2,796,243 + -2.6
2,796,316 + -0.4
2,796,345 + +0.6
2,796,385 - +0.3
2,796,489 - HP15_2646 0.18 +0.3
2,796,545 + HP15_2646 0.23 +0.1
2,796,645 - HP15_2646 0.33 +0.4
2,796,649 + HP15_2646 0.33 -2.1
2,796,806 + HP15_2646 0.48 +0.8
2,796,840 + HP15_2646 0.51 +0.8
2,796,840 + HP15_2646 0.51 +0.0
2,796,848 - HP15_2646 0.52 +0.7
2,796,876 - HP15_2646 0.54 -0.7
2,796,927 + HP15_2646 0.59 +1.9
2,796,945 + HP15_2646 0.61 -0.0
2,797,139 + HP15_2646 0.79 -0.4
2,797,147 - HP15_2646 0.80 -1.1
2,797,187 + HP15_2646 0.84 +0.6

Or see this region's nucleotide sequence