Strain Fitness in Marinobacter adhaerens HP15 around HP15_2600

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2599 and HP15_2600 are separated by 14 nucleotidesHP15_2600 and HP15_2601 are separated by 19 nucleotidesHP15_2601 and HP15_2602 overlap by 1 nucleotides HP15_2599: HP15_2599 - isopropylmalate isomerase large subunit, at 2,747,560 to 2,748,969 _2599 HP15_2600: HP15_2600 - isopropylmalate isomerase large subunit, at 2,748,984 to 2,749,379 _2600 HP15_2601: HP15_2601 - N-carbamoylsarcosine amidase, at 2,749,399 to 2,749,989 _2601 HP15_2602: HP15_2602 - hydantoin utilization protein B, at 2,749,989 to 2,751,860 _2602 Position (kb) 2748 2749 2750Strain fitness (log2 ratio) -1 0 1 2at 2747.989 kb on + strand, within HP15_2599at 2747.997 kb on - strand, within HP15_2599at 2748.192 kb on - strand, within HP15_2599at 2748.211 kb on + strand, within HP15_2599at 2748.225 kb on - strand, within HP15_2599at 2748.231 kb on - strand, within HP15_2599at 2748.327 kb on + strand, within HP15_2599at 2748.327 kb on + strand, within HP15_2599at 2748.427 kb on + strand, within HP15_2599at 2748.451 kb on - strand, within HP15_2599at 2748.471 kb on + strand, within HP15_2599at 2748.597 kb on - strand, within HP15_2599at 2748.604 kb on + strand, within HP15_2599at 2748.604 kb on + strand, within HP15_2599at 2748.604 kb on + strand, within HP15_2599at 2748.612 kb on - strand, within HP15_2599at 2748.615 kb on + strand, within HP15_2599at 2748.623 kb on - strand, within HP15_2599at 2748.887 kb on + strandat 2748.887 kb on + strandat 2748.887 kb on + strandat 2748.887 kb on + strandat 2748.887 kb on + strandat 2748.895 kb on - strandat 2748.962 kb on - strandat 2748.973 kb on - strandat 2749.114 kb on + strand, within HP15_2600at 2749.122 kb on - strand, within HP15_2600at 2749.192 kb on + strand, within HP15_2600at 2749.430 kb on + strandat 2749.495 kb on + strand, within HP15_2601at 2749.576 kb on - strand, within HP15_2601at 2749.638 kb on - strand, within HP15_2601at 2749.701 kb on + strand, within HP15_2601at 2749.898 kb on - strand, within HP15_2601at 2749.997 kb on + strandat 2749.997 kb on + strandat 2749.997 kb on + strandat 2750.005 kb on - strandat 2750.007 kb on + strandat 2750.031 kb on + strandat 2750.084 kb on + strandat 2750.086 kb on + strandat 2750.091 kb on - strandat 2750.094 kb on - strandat 2750.356 kb on - strand, within HP15_2602at 2750.370 kb on - strand, within HP15_2602

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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2,747,989 + HP15_2599 0.30 -0.3
2,747,997 - HP15_2599 0.31 -0.3
2,748,192 - HP15_2599 0.45 -0.9
2,748,211 + HP15_2599 0.46 +0.1
2,748,225 - HP15_2599 0.47 +0.3
2,748,231 - HP15_2599 0.48 +0.2
2,748,327 + HP15_2599 0.54 +0.7
2,748,327 + HP15_2599 0.54 -0.0
2,748,427 + HP15_2599 0.61 +0.5
2,748,451 - HP15_2599 0.63 +0.2
2,748,471 + HP15_2599 0.65 -0.7
2,748,597 - HP15_2599 0.74 -0.7
2,748,604 + HP15_2599 0.74 +2.0
2,748,604 + HP15_2599 0.74 +0.4
2,748,604 + HP15_2599 0.74 -0.6
2,748,612 - HP15_2599 0.75 +0.4
2,748,615 + HP15_2599 0.75 -0.0
2,748,623 - HP15_2599 0.75 +0.3
2,748,887 + -0.8
2,748,887 + -0.3
2,748,887 + +0.0
2,748,887 + -0.3
2,748,887 + +0.6
2,748,895 - -0.0
2,748,962 - -0.1
2,748,973 - -0.3
2,749,114 + HP15_2600 0.33 -0.4
2,749,122 - HP15_2600 0.35 -1.2
2,749,192 + HP15_2600 0.53 +0.4
2,749,430 + -1.6
2,749,495 + HP15_2601 0.16 +0.7
2,749,576 - HP15_2601 0.30 -1.2
2,749,638 - HP15_2601 0.40 -0.3
2,749,701 + HP15_2601 0.51 -1.0
2,749,898 - HP15_2601 0.84 +1.0
2,749,997 + +0.2
2,749,997 + +0.5
2,749,997 + +0.1
2,750,005 - -0.5
2,750,007 + -0.0
2,750,031 + -0.3
2,750,084 + +0.8
2,750,086 + +0.5
2,750,091 - +0.8
2,750,094 - +0.9
2,750,356 - HP15_2602 0.20 +0.1
2,750,370 - HP15_2602 0.20 -1.2

Or see this region's nucleotide sequence