Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2419 and HP15_2420 are separated by 892 nucleotides HP15_2420 and HP15_2421 are separated by 212 nucleotides
HP15_2419: HP15_2419 - bax protein, at 2,555,547 to 2,556,482
_2419
HP15_2420: HP15_2420 - regulatory protein, LuxR, at 2,557,375 to 2,560,077
_2420
HP15_2421: HP15_2421 - secreted protein containing DUF1329, at 2,560,290 to 2,561,651
_2421
Position (kb)
2557
2558
2559
2560
2561 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2556.397 kb on + strand at 2556.456 kb on - strand at 2556.493 kb on - strand at 2556.516 kb on + strand at 2556.594 kb on - strand at 2556.704 kb on + strand at 2556.707 kb on - strand at 2556.761 kb on - strand at 2556.813 kb on + strand at 2557.097 kb on + strand at 2557.381 kb on - strand at 2557.381 kb on - strand at 2557.637 kb on + strand at 2557.818 kb on + strand, within HP15_2420 at 2557.917 kb on + strand, within HP15_2420 at 2557.925 kb on - strand, within HP15_2420 at 2557.925 kb on - strand, within HP15_2420 at 2558.160 kb on - strand, within HP15_2420 at 2558.399 kb on + strand, within HP15_2420 at 2558.407 kb on - strand, within HP15_2420 at 2558.611 kb on + strand, within HP15_2420 at 2558.622 kb on + strand, within HP15_2420 at 2558.640 kb on - strand, within HP15_2420 at 2558.641 kb on + strand, within HP15_2420 at 2558.696 kb on + strand, within HP15_2420 at 2558.696 kb on + strand, within HP15_2420 at 2558.704 kb on - strand, within HP15_2420 at 2558.766 kb on + strand, within HP15_2420 at 2558.906 kb on + strand, within HP15_2420 at 2558.914 kb on - strand, within HP15_2420 at 2558.919 kb on - strand, within HP15_2420 at 2559.140 kb on + strand, within HP15_2420 at 2559.148 kb on - strand, within HP15_2420 at 2559.163 kb on - strand, within HP15_2420 at 2559.174 kb on + strand, within HP15_2420 at 2559.222 kb on + strand, within HP15_2420 at 2559.331 kb on - strand, within HP15_2420 at 2559.427 kb on - strand, within HP15_2420 at 2559.435 kb on + strand, within HP15_2420 at 2559.459 kb on - strand, within HP15_2420 at 2559.621 kb on + strand, within HP15_2420 at 2559.665 kb on - strand, within HP15_2420 at 2559.725 kb on - strand, within HP15_2420 at 2559.798 kb on - strand, within HP15_2420 at 2559.834 kb on - strand at 2560.059 kb on + strand at 2560.160 kb on + strand at 2560.295 kb on - strand at 2560.370 kb on + strand at 2560.385 kb on + strand at 2560.489 kb on + strand, within HP15_2421 at 2560.507 kb on - strand, within HP15_2421 at 2560.576 kb on - strand, within HP15_2421 at 2560.621 kb on - strand, within HP15_2421 at 2560.653 kb on + strand, within HP15_2421 at 2560.676 kb on + strand, within HP15_2421 at 2560.774 kb on + strand, within HP15_2421 at 2560.782 kb on - strand, within HP15_2421 at 2560.782 kb on - strand, within HP15_2421 at 2560.824 kb on - strand, within HP15_2421 at 2560.841 kb on - strand, within HP15_2421 at 2560.966 kb on + strand, within HP15_2421
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 2,556,397 + -0.5 2,556,456 - -0.3 2,556,493 - -0.3 2,556,516 + -1.9 2,556,594 - -0.3 2,556,704 + +0.5 2,556,707 - +0.2 2,556,761 - -2.0 2,556,813 + +0.5 2,557,097 + -0.2 2,557,381 - -0.6 2,557,381 - +0.5 2,557,637 + +0.6 2,557,818 + HP15_2420 0.16 -0.2 2,557,917 + HP15_2420 0.20 -2.7 2,557,925 - HP15_2420 0.20 -0.4 2,557,925 - HP15_2420 0.20 +0.1 2,558,160 - HP15_2420 0.29 -0.3 2,558,399 + HP15_2420 0.38 +0.0 2,558,407 - HP15_2420 0.38 +0.7 2,558,611 + HP15_2420 0.46 +0.6 2,558,622 + HP15_2420 0.46 +0.1 2,558,640 - HP15_2420 0.47 -0.0 2,558,641 + HP15_2420 0.47 -0.1 2,558,696 + HP15_2420 0.49 -0.7 2,558,696 + HP15_2420 0.49 -0.9 2,558,704 - HP15_2420 0.49 +0.8 2,558,766 + HP15_2420 0.51 -0.3 2,558,906 + HP15_2420 0.57 +0.1 2,558,914 - HP15_2420 0.57 -1.2 2,558,919 - HP15_2420 0.57 +0.6 2,559,140 + HP15_2420 0.65 +0.9 2,559,148 - HP15_2420 0.66 +1.4 2,559,163 - HP15_2420 0.66 -1.9 2,559,174 + HP15_2420 0.67 -0.3 2,559,222 + HP15_2420 0.68 -1.9 2,559,331 - HP15_2420 0.72 -0.3 2,559,427 - HP15_2420 0.76 -2.6 2,559,435 + HP15_2420 0.76 +0.3 2,559,459 - HP15_2420 0.77 +0.9 2,559,621 + HP15_2420 0.83 +0.3 2,559,665 - HP15_2420 0.85 -1.5 2,559,725 - HP15_2420 0.87 +0.6 2,559,798 - HP15_2420 0.90 -0.2 2,559,834 - +0.5 2,560,059 + -1.0 2,560,160 + -0.3 2,560,295 - +0.0 2,560,370 + -0.2 2,560,385 + -0.9 2,560,489 + HP15_2421 0.15 -0.3 2,560,507 - HP15_2421 0.16 -1.9 2,560,576 - HP15_2421 0.21 -0.5 2,560,621 - HP15_2421 0.24 -0.7 2,560,653 + HP15_2421 0.27 -0.3 2,560,676 + HP15_2421 0.28 +2.2 2,560,774 + HP15_2421 0.36 -1.0 2,560,782 - HP15_2421 0.36 -0.3 2,560,782 - HP15_2421 0.36 +1.7 2,560,824 - HP15_2421 0.39 -0.5 2,560,841 - HP15_2421 0.40 -0.5 2,560,966 + HP15_2421 0.50 -0.7
Or see this region's nucleotide sequence