Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2411 and HP15_2412 are separated by 3 nucleotides HP15_2412 and HP15_2413 overlap by 8 nucleotides HP15_2413 and HP15_2414 overlap by 1 nucleotides HP15_2414 and HP15_2415 are separated by 43 nucleotides
HP15_2411: HP15_2411 - type IV pilus prepilin peptidase PilD, at 2,546,520 to 2,547,395
_2411
HP15_2412: HP15_2412 - dephospho-CoA kinase, at 2,547,399 to 2,547,998
_2412
HP15_2413: HP15_2413 - conserved hypothetical protein, secreted, at 2,547,991 to 2,549,085
_2413
HP15_2414: HP15_2414 - protein containing uncharacterized protein family UPF0066 domains, at 2,549,085 to 2,549,828
_2414
HP15_2415: HP15_2415 - sensory box sensor histidine kinase/response regulator, at 2,549,872 to 2,552,223
_2415
Position (kb)
2547
2548
2549
2550 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2547.006 kb on - strand, within HP15_2411 at 2547.006 kb on - strand, within HP15_2411 at 2547.014 kb on + strand, within HP15_2411 at 2547.025 kb on + strand, within HP15_2411 at 2547.084 kb on - strand, within HP15_2411 at 2547.270 kb on - strand, within HP15_2411 at 2547.294 kb on - strand, within HP15_2411 at 2547.333 kb on - strand at 2548.024 kb on + strand at 2548.034 kb on - strand at 2548.167 kb on + strand, within HP15_2413 at 2548.273 kb on + strand, within HP15_2413 at 2548.282 kb on - strand, within HP15_2413 at 2548.292 kb on + strand, within HP15_2413 at 2548.319 kb on - strand, within HP15_2413 at 2548.481 kb on - strand, within HP15_2413 at 2548.544 kb on - strand, within HP15_2413 at 2548.585 kb on + strand, within HP15_2413 at 2548.591 kb on + strand, within HP15_2413 at 2548.722 kb on - strand, within HP15_2413 at 2548.785 kb on - strand, within HP15_2413 at 2548.797 kb on - strand, within HP15_2413 at 2548.898 kb on - strand, within HP15_2413 at 2549.009 kb on + strand at 2549.017 kb on - strand at 2549.185 kb on + strand, within HP15_2414 at 2549.415 kb on - strand, within HP15_2414 at 2549.556 kb on + strand, within HP15_2414 at 2549.564 kb on - strand, within HP15_2414 at 2549.672 kb on + strand, within HP15_2414 at 2549.748 kb on + strand, within HP15_2414 at 2549.906 kb on - strand at 2549.936 kb on + strand at 2550.054 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 2,547,006 - HP15_2411 0.55 -0.6 2,547,006 - HP15_2411 0.55 +0.8 2,547,014 + HP15_2411 0.56 -0.0 2,547,025 + HP15_2411 0.58 +0.9 2,547,084 - HP15_2411 0.64 +1.3 2,547,270 - HP15_2411 0.86 +0.9 2,547,294 - HP15_2411 0.88 +1.1 2,547,333 - +1.0 2,548,024 + -2.3 2,548,034 - +1.4 2,548,167 + HP15_2413 0.16 +0.9 2,548,273 + HP15_2413 0.26 -2.2 2,548,282 - HP15_2413 0.27 +0.0 2,548,292 + HP15_2413 0.27 -0.4 2,548,319 - HP15_2413 0.30 +1.0 2,548,481 - HP15_2413 0.45 -1.4 2,548,544 - HP15_2413 0.51 -1.1 2,548,585 + HP15_2413 0.54 +0.1 2,548,591 + HP15_2413 0.55 -1.1 2,548,722 - HP15_2413 0.67 +0.3 2,548,785 - HP15_2413 0.73 -0.1 2,548,797 - HP15_2413 0.74 -0.6 2,548,898 - HP15_2413 0.83 +0.3 2,549,009 + +0.1 2,549,017 - +0.4 2,549,185 + HP15_2414 0.13 +0.3 2,549,415 - HP15_2414 0.44 -0.5 2,549,556 + HP15_2414 0.63 -0.5 2,549,564 - HP15_2414 0.64 -1.6 2,549,672 + HP15_2414 0.79 +0.1 2,549,748 + HP15_2414 0.89 -0.0 2,549,906 - -1.6 2,549,936 + -4.5 2,550,054 - -2.1
Or see this region's nucleotide sequence