Strain Fitness in Marinobacter adhaerens HP15 around HP15_2413

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2411 and HP15_2412 are separated by 3 nucleotidesHP15_2412 and HP15_2413 overlap by 8 nucleotidesHP15_2413 and HP15_2414 overlap by 1 nucleotidesHP15_2414 and HP15_2415 are separated by 43 nucleotides HP15_2411: HP15_2411 - type IV pilus prepilin peptidase PilD, at 2,546,520 to 2,547,395 _2411 HP15_2412: HP15_2412 - dephospho-CoA kinase, at 2,547,399 to 2,547,998 _2412 HP15_2413: HP15_2413 - conserved hypothetical protein, secreted, at 2,547,991 to 2,549,085 _2413 HP15_2414: HP15_2414 - protein containing uncharacterized protein family UPF0066 domains, at 2,549,085 to 2,549,828 _2414 HP15_2415: HP15_2415 - sensory box sensor histidine kinase/response regulator, at 2,549,872 to 2,552,223 _2415 Position (kb) 2547 2548 2549 2550Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2547.006 kb on - strand, within HP15_2411at 2547.006 kb on - strand, within HP15_2411at 2547.014 kb on + strand, within HP15_2411at 2547.025 kb on + strand, within HP15_2411at 2547.084 kb on - strand, within HP15_2411at 2547.270 kb on - strand, within HP15_2411at 2547.294 kb on - strand, within HP15_2411at 2547.333 kb on - strandat 2548.024 kb on + strandat 2548.034 kb on - strandat 2548.167 kb on + strand, within HP15_2413at 2548.273 kb on + strand, within HP15_2413at 2548.282 kb on - strand, within HP15_2413at 2548.292 kb on + strand, within HP15_2413at 2548.319 kb on - strand, within HP15_2413at 2548.481 kb on - strand, within HP15_2413at 2548.544 kb on - strand, within HP15_2413at 2548.585 kb on + strand, within HP15_2413at 2548.591 kb on + strand, within HP15_2413at 2548.722 kb on - strand, within HP15_2413at 2548.785 kb on - strand, within HP15_2413at 2548.797 kb on - strand, within HP15_2413at 2548.898 kb on - strand, within HP15_2413at 2549.009 kb on + strandat 2549.017 kb on - strandat 2549.185 kb on + strand, within HP15_2414at 2549.415 kb on - strand, within HP15_2414at 2549.556 kb on + strand, within HP15_2414at 2549.564 kb on - strand, within HP15_2414at 2549.672 kb on + strand, within HP15_2414at 2549.748 kb on + strand, within HP15_2414at 2549.906 kb on - strandat 2549.936 kb on + strandat 2550.054 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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2,547,006 - HP15_2411 0.55 -0.6
2,547,006 - HP15_2411 0.55 +0.8
2,547,014 + HP15_2411 0.56 -0.0
2,547,025 + HP15_2411 0.58 +0.9
2,547,084 - HP15_2411 0.64 +1.3
2,547,270 - HP15_2411 0.86 +0.9
2,547,294 - HP15_2411 0.88 +1.1
2,547,333 - +1.0
2,548,024 + -2.3
2,548,034 - +1.4
2,548,167 + HP15_2413 0.16 +0.9
2,548,273 + HP15_2413 0.26 -2.2
2,548,282 - HP15_2413 0.27 +0.0
2,548,292 + HP15_2413 0.27 -0.4
2,548,319 - HP15_2413 0.30 +1.0
2,548,481 - HP15_2413 0.45 -1.4
2,548,544 - HP15_2413 0.51 -1.1
2,548,585 + HP15_2413 0.54 +0.1
2,548,591 + HP15_2413 0.55 -1.1
2,548,722 - HP15_2413 0.67 +0.3
2,548,785 - HP15_2413 0.73 -0.1
2,548,797 - HP15_2413 0.74 -0.6
2,548,898 - HP15_2413 0.83 +0.3
2,549,009 + +0.1
2,549,017 - +0.4
2,549,185 + HP15_2414 0.13 +0.3
2,549,415 - HP15_2414 0.44 -0.5
2,549,556 + HP15_2414 0.63 -0.5
2,549,564 - HP15_2414 0.64 -1.6
2,549,672 + HP15_2414 0.79 +0.1
2,549,748 + HP15_2414 0.89 -0.0
2,549,906 - -1.6
2,549,936 + -4.5
2,550,054 - -2.1

Or see this region's nucleotide sequence