Strain Fitness in Marinobacter adhaerens HP15 around HP15_1899

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1898 and HP15_1899 are separated by 17 nucleotidesHP15_1899 and HP15_1900 are separated by 11 nucleotidesHP15_1900 and HP15_1901 are separated by 32 nucleotides HP15_1898: HP15_1898 - glycosyl transferase family 2, at 2,007,998 to 2,008,900 _1898 HP15_1899: HP15_1899 - UDP-Glucose 4-empimerase, at 2,008,918 to 2,009,943 _1899 HP15_1900: HP15_1900 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,009,955 to 2,010,479 _1900 HP15_1901: HP15_1901 - SAF domain protein, at 2,010,512 to 2,011,798 _1901 Position (kb) 2008 2009 2010Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2007.976 kb on - strandat 2007.988 kb on + strandat 2008.118 kb on - strand, within HP15_1898at 2008.148 kb on - strand, within HP15_1898at 2008.353 kb on + strand, within HP15_1898at 2008.508 kb on + strand, within HP15_1898at 2008.546 kb on + strand, within HP15_1898at 2008.546 kb on - strand, within HP15_1898at 2008.624 kb on - strand, within HP15_1898at 2008.651 kb on + strand, within HP15_1898at 2008.651 kb on + strand, within HP15_1898at 2008.748 kb on - strand, within HP15_1898at 2008.753 kb on + strand, within HP15_1898at 2008.781 kb on - strand, within HP15_1898at 2008.859 kb on - strandat 2008.936 kb on + strandat 2008.985 kb on - strandat 2009.053 kb on + strand, within HP15_1899at 2009.100 kb on - strand, within HP15_1899at 2009.100 kb on - strand, within HP15_1899at 2009.137 kb on + strand, within HP15_1899at 2009.306 kb on - strand, within HP15_1899at 2009.321 kb on + strand, within HP15_1899at 2009.340 kb on + strand, within HP15_1899at 2009.340 kb on + strand, within HP15_1899at 2009.452 kb on - strand, within HP15_1899at 2009.463 kb on - strand, within HP15_1899at 2009.477 kb on + strand, within HP15_1899at 2009.478 kb on + strand, within HP15_1899at 2009.604 kb on - strand, within HP15_1899at 2009.692 kb on + strand, within HP15_1899at 2009.722 kb on - strand, within HP15_1899at 2009.722 kb on - strand, within HP15_1899at 2009.722 kb on - strand, within HP15_1899at 2009.783 kb on + strand, within HP15_1899at 2009.801 kb on + strand, within HP15_1899at 2009.801 kb on - strand, within HP15_1899at 2009.801 kb on - strand, within HP15_1899at 2009.819 kb on - strand, within HP15_1899at 2010.302 kb on - strand, within HP15_1900at 2010.395 kb on - strand, within HP15_1900at 2010.548 kb on + strandat 2010.601 kb on + strandat 2010.616 kb on + strandat 2010.624 kb on - strandat 2010.668 kb on - strand, within HP15_1901at 2010.701 kb on + strand, within HP15_1901at 2010.757 kb on + strand, within HP15_1901at 2010.907 kb on - strand, within HP15_1901

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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2,007,976 - -1.4
2,007,988 + +0.1
2,008,118 - HP15_1898 0.13 -2.7
2,008,148 - HP15_1898 0.17 +1.9
2,008,353 + HP15_1898 0.39 +0.4
2,008,508 + HP15_1898 0.56 +0.0
2,008,546 + HP15_1898 0.61 -0.1
2,008,546 - HP15_1898 0.61 -0.2
2,008,624 - HP15_1898 0.69 +0.7
2,008,651 + HP15_1898 0.72 +0.1
2,008,651 + HP15_1898 0.72 +0.6
2,008,748 - HP15_1898 0.83 -0.1
2,008,753 + HP15_1898 0.84 -1.0
2,008,781 - HP15_1898 0.87 -0.1
2,008,859 - +0.0
2,008,936 + +0.9
2,008,985 - +1.0
2,009,053 + HP15_1899 0.13 -0.8
2,009,100 - HP15_1899 0.18 +0.9
2,009,100 - HP15_1899 0.18 +0.1
2,009,137 + HP15_1899 0.21 -0.1
2,009,306 - HP15_1899 0.38 +0.2
2,009,321 + HP15_1899 0.39 -0.0
2,009,340 + HP15_1899 0.41 +0.6
2,009,340 + HP15_1899 0.41 -1.6
2,009,452 - HP15_1899 0.52 -3.0
2,009,463 - HP15_1899 0.53 -0.2
2,009,477 + HP15_1899 0.54 -0.4
2,009,478 + HP15_1899 0.55 +1.7
2,009,604 - HP15_1899 0.67 +0.6
2,009,692 + HP15_1899 0.75 +0.5
2,009,722 - HP15_1899 0.78 +0.0
2,009,722 - HP15_1899 0.78 -1.1
2,009,722 - HP15_1899 0.78 -0.1
2,009,783 + HP15_1899 0.84 +0.2
2,009,801 + HP15_1899 0.86 +0.5
2,009,801 - HP15_1899 0.86 -0.4
2,009,801 - HP15_1899 0.86 -0.2
2,009,819 - HP15_1899 0.88 +2.2
2,010,302 - HP15_1900 0.66 -0.3
2,010,395 - HP15_1900 0.84 -1.7
2,010,548 + -0.8
2,010,601 + +0.5
2,010,616 + -0.2
2,010,624 - +0.0
2,010,668 - HP15_1901 0.12 -0.7
2,010,701 + HP15_1901 0.15 -0.7
2,010,757 + HP15_1901 0.19 +0.2
2,010,907 - HP15_1901 0.31 -1.6

Or see this region's nucleotide sequence