Strain Fitness in Marinobacter adhaerens HP15 around HP15_1889

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1887 and HP15_1888 overlap by 4 nucleotidesHP15_1888 and HP15_1889 overlap by 1 nucleotidesHP15_1889 and HP15_1890 are separated by 81 nucleotides HP15_1887: HP15_1887 - aldose 1-epimerase family protein, at 1,991,724 to 1,992,524 _1887 HP15_1888: HP15_1888 - phospholipid/glycerol acyltransferase, at 1,992,521 to 1,993,336 _1888 HP15_1889: HP15_1889 - NAD-dependent epimerase/dehydratase, at 1,993,336 to 1,994,283 _1889 HP15_1890: HP15_1890 - periplasmic sensor signal transduction histidine kinase, at 1,994,365 to 1,996,500 _1890 Position (kb) 1993 1994 1995Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1992.470 kb on + strandat 1992.498 kb on + strandat 1992.501 kb on - strandat 1992.571 kb on - strandat 1992.626 kb on + strand, within HP15_1888at 1992.649 kb on - strand, within HP15_1888at 1992.710 kb on + strand, within HP15_1888at 1992.710 kb on + strand, within HP15_1888at 1992.716 kb on - strand, within HP15_1888at 1992.717 kb on - strand, within HP15_1888at 1992.761 kb on + strand, within HP15_1888at 1992.805 kb on - strand, within HP15_1888at 1992.864 kb on + strand, within HP15_1888at 1992.897 kb on + strand, within HP15_1888at 1992.905 kb on - strand, within HP15_1888at 1992.943 kb on + strand, within HP15_1888at 1992.981 kb on - strand, within HP15_1888at 1993.054 kb on + strand, within HP15_1888at 1993.139 kb on + strand, within HP15_1888at 1993.173 kb on - strand, within HP15_1888at 1993.191 kb on + strand, within HP15_1888at 1993.418 kb on - strandat 1993.455 kb on + strand, within HP15_1889at 1993.704 kb on + strand, within HP15_1889at 1993.709 kb on + strand, within HP15_1889at 1993.745 kb on - strand, within HP15_1889at 1993.752 kb on + strand, within HP15_1889at 1993.752 kb on + strand, within HP15_1889at 1993.757 kb on + strand, within HP15_1889at 1993.757 kb on + strand, within HP15_1889at 1993.758 kb on - strand, within HP15_1889at 1993.767 kb on + strand, within HP15_1889at 1993.775 kb on - strand, within HP15_1889at 1993.885 kb on - strand, within HP15_1889at 1993.973 kb on + strand, within HP15_1889at 1993.991 kb on - strand, within HP15_1889at 1994.023 kb on + strand, within HP15_1889at 1994.031 kb on - strand, within HP15_1889at 1994.031 kb on - strand, within HP15_1889at 1994.051 kb on + strand, within HP15_1889at 1994.051 kb on + strand, within HP15_1889at 1994.313 kb on + strandat 1994.321 kb on - strandat 1994.321 kb on - strandat 1994.804 kb on - strand, within HP15_1890at 1994.876 kb on - strand, within HP15_1890at 1995.059 kb on + strand, within HP15_1890at 1995.157 kb on + strand, within HP15_1890at 1995.267 kb on + strand, within HP15_1890

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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1,992,470 + +0.2
1,992,498 + +0.7
1,992,501 - -0.2
1,992,571 - +0.6
1,992,626 + HP15_1888 0.13 +0.8
1,992,649 - HP15_1888 0.16 -1.1
1,992,710 + HP15_1888 0.23 +0.2
1,992,710 + HP15_1888 0.23 +1.6
1,992,716 - HP15_1888 0.24 -0.3
1,992,717 - HP15_1888 0.24 +1.9
1,992,761 + HP15_1888 0.29 -0.4
1,992,805 - HP15_1888 0.35 +0.2
1,992,864 + HP15_1888 0.42 +0.0
1,992,897 + HP15_1888 0.46 +0.1
1,992,905 - HP15_1888 0.47 -0.7
1,992,943 + HP15_1888 0.52 +0.5
1,992,981 - HP15_1888 0.56 +0.1
1,993,054 + HP15_1888 0.65 +0.3
1,993,139 + HP15_1888 0.76 +0.1
1,993,173 - HP15_1888 0.80 +0.2
1,993,191 + HP15_1888 0.82 -0.2
1,993,418 - +0.2
1,993,455 + HP15_1889 0.13 +0.6
1,993,704 + HP15_1889 0.39 +0.7
1,993,709 + HP15_1889 0.39 +1.1
1,993,745 - HP15_1889 0.43 +0.1
1,993,752 + HP15_1889 0.44 +0.3
1,993,752 + HP15_1889 0.44 +0.3
1,993,757 + HP15_1889 0.44 -2.9
1,993,757 + HP15_1889 0.44 -0.4
1,993,758 - HP15_1889 0.45 -0.4
1,993,767 + HP15_1889 0.45 -0.1
1,993,775 - HP15_1889 0.46 -0.6
1,993,885 - HP15_1889 0.58 -0.6
1,993,973 + HP15_1889 0.67 -1.1
1,993,991 - HP15_1889 0.69 +1.1
1,994,023 + HP15_1889 0.72 +0.2
1,994,031 - HP15_1889 0.73 +0.2
1,994,031 - HP15_1889 0.73 +0.3
1,994,051 + HP15_1889 0.75 +0.3
1,994,051 + HP15_1889 0.75 -0.7
1,994,313 + +0.0
1,994,321 - -0.2
1,994,321 - -0.4
1,994,804 - HP15_1890 0.21 -0.4
1,994,876 - HP15_1890 0.24 -0.2
1,995,059 + HP15_1890 0.32 -0.3
1,995,157 + HP15_1890 0.37 -2.1
1,995,267 + HP15_1890 0.42 -1.0

Or see this region's nucleotide sequence