Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1808 and HP15_1809 overlap by 4 nucleotides HP15_1809 and HP15_1810 are separated by 1 nucleotides
HP15_1808: HP15_1808 - peptide ABC transporter, permease protein, at 1,901,617 to 1,902,702
_1808
HP15_1809: HP15_1809 - peptide ABC transporter, permease protein, at 1,902,699 to 1,903,727
_1809
HP15_1810: HP15_1810 - peptide ABC transporter, ATP-binding protein, at 1,903,729 to 1,905,333
_1810
Position (kb)
1902
1903
1904 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1901.725 kb on - strand at 1902.019 kb on - strand, within HP15_1808 at 1902.019 kb on - strand, within HP15_1808 at 1902.108 kb on - strand, within HP15_1808 at 1902.331 kb on - strand, within HP15_1808 at 1902.458 kb on - strand, within HP15_1808 at 1902.497 kb on - strand, within HP15_1808 at 1902.544 kb on - strand, within HP15_1808 at 1902.552 kb on - strand, within HP15_1808 at 1902.562 kb on + strand, within HP15_1808 at 1902.570 kb on - strand, within HP15_1808 at 1902.628 kb on - strand at 1902.833 kb on + strand, within HP15_1809 at 1903.059 kb on + strand, within HP15_1809 at 1903.144 kb on + strand, within HP15_1809 at 1903.144 kb on + strand, within HP15_1809 at 1903.152 kb on - strand, within HP15_1809 at 1903.152 kb on - strand, within HP15_1809 at 1903.197 kb on - strand, within HP15_1809 at 1903.255 kb on - strand, within HP15_1809 at 1903.422 kb on + strand, within HP15_1809 at 1903.466 kb on + strand, within HP15_1809 at 1903.527 kb on + strand, within HP15_1809 at 1903.601 kb on + strand, within HP15_1809 at 1903.621 kb on + strand, within HP15_1809 at 1903.729 kb on - strand at 1903.983 kb on - strand, within HP15_1810 at 1904.043 kb on - strand, within HP15_1810 at 1904.043 kb on - strand, within HP15_1810 at 1904.117 kb on + strand, within HP15_1810 at 1904.117 kb on + strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.310 kb on + strand, within HP15_1810 at 1904.342 kb on - strand, within HP15_1810 at 1904.369 kb on + strand, within HP15_1810 at 1904.464 kb on - strand, within HP15_1810 at 1904.482 kb on - strand, within HP15_1810
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,901,725 - -0.0 1,902,019 - HP15_1808 0.37 -1.1 1,902,019 - HP15_1808 0.37 -2.0 1,902,108 - HP15_1808 0.45 +1.9 1,902,331 - HP15_1808 0.66 +0.6 1,902,458 - HP15_1808 0.77 +0.2 1,902,497 - HP15_1808 0.81 -0.4 1,902,544 - HP15_1808 0.85 -0.3 1,902,552 - HP15_1808 0.86 -0.7 1,902,562 + HP15_1808 0.87 -2.0 1,902,570 - HP15_1808 0.88 -0.2 1,902,628 - -0.4 1,902,833 + HP15_1809 0.13 -0.4 1,903,059 + HP15_1809 0.35 -1.7 1,903,144 + HP15_1809 0.43 -0.4 1,903,144 + HP15_1809 0.43 +0.9 1,903,152 - HP15_1809 0.44 -2.6 1,903,152 - HP15_1809 0.44 -0.7 1,903,197 - HP15_1809 0.48 -1.3 1,903,255 - HP15_1809 0.54 -0.9 1,903,422 + HP15_1809 0.70 -1.0 1,903,466 + HP15_1809 0.75 -1.2 1,903,527 + HP15_1809 0.80 -2.4 1,903,601 + HP15_1809 0.88 -2.6 1,903,621 + HP15_1809 0.90 -0.2 1,903,729 - -0.5 1,903,983 - HP15_1810 0.16 -0.2 1,904,043 - HP15_1810 0.20 +0.1 1,904,043 - HP15_1810 0.20 -0.6 1,904,117 + HP15_1810 0.24 -3.1 1,904,117 + HP15_1810 0.24 -2.0 1,904,125 - HP15_1810 0.25 -1.7 1,904,125 - HP15_1810 0.25 -1.7 1,904,125 - HP15_1810 0.25 -2.6 1,904,310 + HP15_1810 0.36 -0.6 1,904,342 - HP15_1810 0.38 -0.4 1,904,369 + HP15_1810 0.40 -0.9 1,904,464 - HP15_1810 0.46 -1.5 1,904,482 - HP15_1810 0.47 +0.0
Or see this region's nucleotide sequence