Strain Fitness in Marinobacter adhaerens HP15 around HP15_1412

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1410 and HP15_1411 are separated by 88 nucleotidesHP15_1411 and HP15_1412 are separated by 13 nucleotidesHP15_1412 and HP15_1413 are separated by 144 nucleotidesHP15_1413 and HP15_1414 are separated by 16 nucleotides HP15_1410: HP15_1410 - iron(III) compound receptor, at 1,489,076 to 1,491,175 _1410 HP15_1411: HP15_1411 - hypothetical 3-methyladenine DNA glycosylase, at 1,491,264 to 1,491,929 _1411 HP15_1412: HP15_1412 - conserved hypothetical protein, membrane, at 1,491,943 to 1,493,067 _1412 HP15_1413: HP15_1413 - protein containing GCN5-related N-acetyltransferase domain, at 1,493,212 to 1,493,787 _1413 HP15_1414: HP15_1414 - histone deacetylase superfamily protein, at 1,493,804 to 1,494,910 _1414 Position (kb) 1491 1492 1493 1494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1490.958 kb on + strand, within HP15_1410at 1490.963 kb on + strand, within HP15_1410at 1491.136 kb on + strandat 1491.144 kb on - strandat 1491.149 kb on + strandat 1491.397 kb on + strand, within HP15_1411at 1491.400 kb on - strand, within HP15_1411at 1491.400 kb on - strand, within HP15_1411at 1491.405 kb on - strand, within HP15_1411at 1491.431 kb on + strand, within HP15_1411at 1491.431 kb on + strand, within HP15_1411at 1491.508 kb on + strand, within HP15_1411at 1491.530 kb on + strand, within HP15_1411at 1491.535 kb on + strand, within HP15_1411at 1491.715 kb on - strand, within HP15_1411at 1491.777 kb on - strand, within HP15_1411at 1491.932 kb on - strandat 1492.157 kb on + strand, within HP15_1412at 1492.165 kb on - strand, within HP15_1412at 1492.184 kb on - strand, within HP15_1412at 1492.249 kb on + strand, within HP15_1412at 1492.268 kb on + strand, within HP15_1412at 1492.274 kb on - strand, within HP15_1412at 1492.325 kb on + strand, within HP15_1412at 1492.671 kb on - strand, within HP15_1412at 1492.707 kb on + strand, within HP15_1412at 1492.721 kb on + strand, within HP15_1412at 1492.763 kb on + strand, within HP15_1412at 1492.894 kb on - strand, within HP15_1412at 1493.104 kb on + strandat 1493.104 kb on + strandat 1493.112 kb on - strandat 1493.169 kb on - strandat 1493.228 kb on - strandat 1493.265 kb on + strandat 1493.564 kb on + strand, within HP15_1413at 1493.605 kb on + strand, within HP15_1413at 1493.625 kb on - strand, within HP15_1413at 1493.650 kb on + strand, within HP15_1413at 1493.695 kb on + strand, within HP15_1413at 1493.860 kb on + strandat 1493.954 kb on - strand, within HP15_1414at 1493.973 kb on - strand, within HP15_1414

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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1,490,958 + HP15_1410 0.90 +0.5
1,490,963 + HP15_1410 0.90 -0.5
1,491,136 + -0.9
1,491,144 - +0.6
1,491,149 + +0.3
1,491,397 + HP15_1411 0.20 -1.9
1,491,400 - HP15_1411 0.20 +0.1
1,491,400 - HP15_1411 0.20 -0.6
1,491,405 - HP15_1411 0.21 -0.7
1,491,431 + HP15_1411 0.25 +0.2
1,491,431 + HP15_1411 0.25 +0.2
1,491,508 + HP15_1411 0.37 +0.1
1,491,530 + HP15_1411 0.40 +0.3
1,491,535 + HP15_1411 0.41 +0.5
1,491,715 - HP15_1411 0.68 +1.5
1,491,777 - HP15_1411 0.77 +0.0
1,491,932 - -0.1
1,492,157 + HP15_1412 0.19 -0.3
1,492,165 - HP15_1412 0.20 +0.2
1,492,184 - HP15_1412 0.21 +0.7
1,492,249 + HP15_1412 0.27 -3.6
1,492,268 + HP15_1412 0.29 -0.0
1,492,274 - HP15_1412 0.29 +0.4
1,492,325 + HP15_1412 0.34 +0.5
1,492,671 - HP15_1412 0.65 -0.3
1,492,707 + HP15_1412 0.68 +1.1
1,492,721 + HP15_1412 0.69 -1.2
1,492,763 + HP15_1412 0.73 -0.0
1,492,894 - HP15_1412 0.85 +1.3
1,493,104 + -1.5
1,493,104 + -1.0
1,493,112 - +2.3
1,493,169 - -0.2
1,493,228 - +0.8
1,493,265 + -0.8
1,493,564 + HP15_1413 0.61 +0.8
1,493,605 + HP15_1413 0.68 +0.2
1,493,625 - HP15_1413 0.72 +1.5
1,493,650 + HP15_1413 0.76 -1.2
1,493,695 + HP15_1413 0.84 -2.3
1,493,860 + -3.1
1,493,954 - HP15_1414 0.14 +0.6
1,493,973 - HP15_1414 0.15 +0.3

Or see this region's nucleotide sequence