Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1222 and HP15_1223 are separated by 24 nucleotides HP15_1223 and HP15_1224 are separated by 12 nucleotides HP15_1224 and HP15_1225 overlap by 1 nucleotides HP15_1225 and HP15_1226 are separated by 57 nucleotides
HP15_1222: HP15_1222 - conserved hypothetical protein, membrane, at 1,272,492 to 1,272,692
_1222
HP15_1223: HP15_1223 - protein YaaA, at 1,272,717 to 1,273,487
_1223
HP15_1224: HP15_1224 - glutaredoxin 2, at 1,273,500 to 1,273,733
_1224
HP15_1225: HP15_1225 - oxidoreductase, short chain dehydrogenase/reductase family, at 1,273,733 to 1,274,482
_1225
HP15_1226: HP15_1226 - 2-phosphoglycolate phosphatase, prokaryotic, at 1,274,540 to 1,275,211
_1226
Position (kb)
1273
1274 Strain fitness (log2 ratio)
-1
0
1
2 at 1272.556 kb on + strand, within HP15_1222 at 1272.557 kb on + strand, within HP15_1222 at 1272.774 kb on + strand at 1272.796 kb on + strand, within HP15_1223 at 1272.815 kb on + strand, within HP15_1223 at 1272.823 kb on - strand, within HP15_1223 at 1272.883 kb on + strand, within HP15_1223 at 1272.985 kb on - strand, within HP15_1223 at 1273.542 kb on + strand, within HP15_1224 at 1273.550 kb on - strand, within HP15_1224 at 1273.678 kb on + strand, within HP15_1224 at 1273.698 kb on - strand, within HP15_1224 at 1274.002 kb on - strand, within HP15_1225 at 1274.092 kb on - strand, within HP15_1225 at 1274.189 kb on - strand, within HP15_1225 at 1274.270 kb on - strand, within HP15_1225 at 1274.390 kb on - strand, within HP15_1225 at 1274.484 kb on + strand at 1274.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,272,556 + HP15_1222 0.32 +1.3 1,272,557 + HP15_1222 0.32 +2.7 1,272,774 + -0.4 1,272,796 + HP15_1223 0.10 +0.6 1,272,815 + HP15_1223 0.13 +0.6 1,272,823 - HP15_1223 0.14 -0.6 1,272,883 + HP15_1223 0.22 +0.5 1,272,985 - HP15_1223 0.35 +0.9 1,273,542 + HP15_1224 0.18 +0.3 1,273,550 - HP15_1224 0.21 +0.7 1,273,678 + HP15_1224 0.76 +1.9 1,273,698 - HP15_1224 0.85 -0.5 1,274,002 - HP15_1225 0.36 +0.8 1,274,092 - HP15_1225 0.48 -0.0 1,274,189 - HP15_1225 0.61 -0.7 1,274,270 - HP15_1225 0.72 -0.1 1,274,390 - HP15_1225 0.88 +2.7 1,274,484 + +1.4 1,274,486 - +1.7
Or see this region's nucleotide sequence