Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1184 and HP15_1185 overlap by 8 nucleotides HP15_1185 and HP15_1186 are separated by 111 nucleotides HP15_1186 and HP15_1187 are separated by 277 nucleotides HP15_1187 and HP15_1188 overlap by 4 nucleotides
HP15_1184: HP15_1184 - peptidoglycan-binding LysM, at 1,217,194 to 1,218,831
_1184
HP15_1185: HP15_1185 - two component transcriptional regulator, winged helix family, at 1,218,824 to 1,219,558
_1185
HP15_1186: HP15_1186 - DNA topoisomerase III, at 1,219,670 to 1,221,853
_1186
HP15_1187: HP15_1187 - BolA-like protein, at 1,222,131 to 1,222,487
_1187
HP15_1188: HP15_1188 - Sua5/YciO/YrdC/YwlC family protein, at 1,222,484 to 1,223,107
_1188
Position (kb)
1219
1220
1221
1222 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1218.682 kb on - strand at 1218.780 kb on - strand at 1218.835 kb on - strand at 1219.129 kb on + strand, within HP15_1185 at 1219.149 kb on - strand, within HP15_1185 at 1219.215 kb on + strand, within HP15_1185 at 1219.221 kb on - strand, within HP15_1185 at 1219.269 kb on - strand, within HP15_1185 at 1219.310 kb on + strand, within HP15_1185 at 1219.310 kb on + strand, within HP15_1185 at 1219.555 kb on + strand at 1219.566 kb on + strand at 1219.566 kb on + strand at 1219.623 kb on + strand at 1219.699 kb on - strand at 1219.830 kb on + strand at 1220.014 kb on + strand, within HP15_1186 at 1220.020 kb on - strand, within HP15_1186 at 1220.058 kb on + strand, within HP15_1186 at 1220.128 kb on + strand, within HP15_1186 at 1220.157 kb on + strand, within HP15_1186 at 1220.157 kb on + strand, within HP15_1186 at 1220.162 kb on + strand, within HP15_1186 at 1220.165 kb on - strand, within HP15_1186 at 1220.212 kb on - strand, within HP15_1186 at 1220.223 kb on + strand, within HP15_1186 at 1220.392 kb on + strand, within HP15_1186 at 1220.565 kb on + strand, within HP15_1186 at 1220.571 kb on + strand, within HP15_1186 at 1220.756 kb on + strand, within HP15_1186 at 1220.909 kb on - strand, within HP15_1186 at 1220.911 kb on - strand, within HP15_1186 at 1221.021 kb on - strand, within HP15_1186 at 1221.110 kb on - strand, within HP15_1186 at 1221.168 kb on + strand, within HP15_1186 at 1221.168 kb on + strand, within HP15_1186 at 1221.197 kb on - strand, within HP15_1186 at 1221.204 kb on + strand, within HP15_1186 at 1221.206 kb on - strand, within HP15_1186 at 1221.238 kb on + strand, within HP15_1186 at 1221.266 kb on - strand, within HP15_1186 at 1221.365 kb on + strand, within HP15_1186 at 1221.378 kb on - strand, within HP15_1186 at 1221.405 kb on + strand, within HP15_1186 at 1221.428 kb on + strand, within HP15_1186 at 1221.547 kb on + strand, within HP15_1186 at 1221.594 kb on - strand, within HP15_1186 at 1221.598 kb on + strand, within HP15_1186 at 1221.678 kb on + strand at 1221.678 kb on + strand at 1221.784 kb on + strand at 1221.789 kb on + strand at 1221.807 kb on - strand at 1221.857 kb on + strand at 1221.922 kb on - strand at 1221.933 kb on + strand at 1221.950 kb on - strand at 1222.013 kb on + strand at 1222.108 kb on - strand at 1222.113 kb on - strand at 1222.171 kb on - strand, within HP15_1187 at 1222.179 kb on - strand, within HP15_1187 at 1222.553 kb on - strand, within HP15_1188 at 1222.553 kb on - strand, within HP15_1188 at 1222.586 kb on + strand, within HP15_1188 at 1222.689 kb on + strand, within HP15_1188 at 1222.734 kb on - strand, within HP15_1188
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,218,682 - +1.2 1,218,780 - -2.3 1,218,835 - -0.5 1,219,129 + HP15_1185 0.41 +0.3 1,219,149 - HP15_1185 0.44 -0.3 1,219,215 + HP15_1185 0.53 +0.5 1,219,221 - HP15_1185 0.54 +1.2 1,219,269 - HP15_1185 0.61 -0.4 1,219,310 + HP15_1185 0.66 -0.2 1,219,310 + HP15_1185 0.66 -0.1 1,219,555 + +1.5 1,219,566 + +0.0 1,219,566 + -0.3 1,219,623 + +1.2 1,219,699 - -1.5 1,219,830 + -0.2 1,220,014 + HP15_1186 0.16 +1.2 1,220,020 - HP15_1186 0.16 +0.5 1,220,058 + HP15_1186 0.18 +1.9 1,220,128 + HP15_1186 0.21 +0.9 1,220,157 + HP15_1186 0.22 +0.5 1,220,157 + HP15_1186 0.22 +1.3 1,220,162 + HP15_1186 0.23 +0.7 1,220,165 - HP15_1186 0.23 +0.3 1,220,212 - HP15_1186 0.25 +0.8 1,220,223 + HP15_1186 0.25 -1.3 1,220,392 + HP15_1186 0.33 -0.0 1,220,565 + HP15_1186 0.41 +1.1 1,220,571 + HP15_1186 0.41 +1.2 1,220,756 + HP15_1186 0.50 +0.7 1,220,909 - HP15_1186 0.57 +0.3 1,220,911 - HP15_1186 0.57 +0.4 1,221,021 - HP15_1186 0.62 +0.7 1,221,110 - HP15_1186 0.66 -0.0 1,221,168 + HP15_1186 0.69 +1.2 1,221,168 + HP15_1186 0.69 +0.1 1,221,197 - HP15_1186 0.70 +0.2 1,221,204 + HP15_1186 0.70 +0.6 1,221,206 - HP15_1186 0.70 +1.0 1,221,238 + HP15_1186 0.72 +1.2 1,221,266 - HP15_1186 0.73 +0.5 1,221,365 + HP15_1186 0.78 +0.9 1,221,378 - HP15_1186 0.78 +1.0 1,221,405 + HP15_1186 0.79 +0.3 1,221,428 + HP15_1186 0.80 +1.6 1,221,547 + HP15_1186 0.86 +0.6 1,221,594 - HP15_1186 0.88 -1.4 1,221,598 + HP15_1186 0.88 -1.1 1,221,678 + +0.3 1,221,678 + +0.7 1,221,784 + -1.0 1,221,789 + +1.5 1,221,807 - +0.8 1,221,857 + +0.7 1,221,922 - -0.4 1,221,933 + -0.8 1,221,950 - +1.3 1,222,013 + +0.4 1,222,108 - -0.1 1,222,113 - -0.4 1,222,171 - HP15_1187 0.11 +0.2 1,222,179 - HP15_1187 0.13 +1.5 1,222,553 - HP15_1188 0.11 -0.7 1,222,553 - HP15_1188 0.11 +0.7 1,222,586 + HP15_1188 0.16 +0.9 1,222,689 + HP15_1188 0.33 +1.3 1,222,734 - HP15_1188 0.40 +2.5
Or see this region's nucleotide sequence