Strain Fitness in Marinobacter adhaerens HP15 around HP15_1186

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1184 and HP15_1185 overlap by 8 nucleotidesHP15_1185 and HP15_1186 are separated by 111 nucleotidesHP15_1186 and HP15_1187 are separated by 277 nucleotidesHP15_1187 and HP15_1188 overlap by 4 nucleotides HP15_1184: HP15_1184 - peptidoglycan-binding LysM, at 1,217,194 to 1,218,831 _1184 HP15_1185: HP15_1185 - two component transcriptional regulator, winged helix family, at 1,218,824 to 1,219,558 _1185 HP15_1186: HP15_1186 - DNA topoisomerase III, at 1,219,670 to 1,221,853 _1186 HP15_1187: HP15_1187 - BolA-like protein, at 1,222,131 to 1,222,487 _1187 HP15_1188: HP15_1188 - Sua5/YciO/YrdC/YwlC family protein, at 1,222,484 to 1,223,107 _1188 Position (kb) 1219 1220 1221 1222Strain fitness (log2 ratio) -2 -1 0 1 2at 1218.682 kb on - strandat 1218.780 kb on - strandat 1218.835 kb on - strandat 1219.129 kb on + strand, within HP15_1185at 1219.149 kb on - strand, within HP15_1185at 1219.215 kb on + strand, within HP15_1185at 1219.221 kb on - strand, within HP15_1185at 1219.269 kb on - strand, within HP15_1185at 1219.310 kb on + strand, within HP15_1185at 1219.310 kb on + strand, within HP15_1185at 1219.555 kb on + strandat 1219.566 kb on + strandat 1219.566 kb on + strandat 1219.623 kb on + strandat 1219.699 kb on - strandat 1219.830 kb on + strandat 1220.014 kb on + strand, within HP15_1186at 1220.020 kb on - strand, within HP15_1186at 1220.058 kb on + strand, within HP15_1186at 1220.128 kb on + strand, within HP15_1186at 1220.157 kb on + strand, within HP15_1186at 1220.157 kb on + strand, within HP15_1186at 1220.162 kb on + strand, within HP15_1186at 1220.165 kb on - strand, within HP15_1186at 1220.212 kb on - strand, within HP15_1186at 1220.223 kb on + strand, within HP15_1186at 1220.392 kb on + strand, within HP15_1186at 1220.565 kb on + strand, within HP15_1186at 1220.571 kb on + strand, within HP15_1186at 1220.756 kb on + strand, within HP15_1186at 1220.909 kb on - strand, within HP15_1186at 1220.911 kb on - strand, within HP15_1186at 1221.021 kb on - strand, within HP15_1186at 1221.110 kb on - strand, within HP15_1186at 1221.168 kb on + strand, within HP15_1186at 1221.168 kb on + strand, within HP15_1186at 1221.197 kb on - strand, within HP15_1186at 1221.204 kb on + strand, within HP15_1186at 1221.206 kb on - strand, within HP15_1186at 1221.238 kb on + strand, within HP15_1186at 1221.266 kb on - strand, within HP15_1186at 1221.365 kb on + strand, within HP15_1186at 1221.378 kb on - strand, within HP15_1186at 1221.405 kb on + strand, within HP15_1186at 1221.428 kb on + strand, within HP15_1186at 1221.547 kb on + strand, within HP15_1186at 1221.594 kb on - strand, within HP15_1186at 1221.598 kb on + strand, within HP15_1186at 1221.678 kb on + strandat 1221.678 kb on + strandat 1221.784 kb on + strandat 1221.789 kb on + strandat 1221.807 kb on - strandat 1221.857 kb on + strandat 1221.922 kb on - strandat 1221.933 kb on + strandat 1221.950 kb on - strandat 1222.013 kb on + strandat 1222.108 kb on - strandat 1222.113 kb on - strandat 1222.171 kb on - strand, within HP15_1187at 1222.179 kb on - strand, within HP15_1187at 1222.553 kb on - strand, within HP15_1188at 1222.553 kb on - strand, within HP15_1188at 1222.586 kb on + strand, within HP15_1188at 1222.689 kb on + strand, within HP15_1188at 1222.734 kb on - strand, within HP15_1188

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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1,218,682 - +1.2
1,218,780 - -2.3
1,218,835 - -0.5
1,219,129 + HP15_1185 0.41 +0.3
1,219,149 - HP15_1185 0.44 -0.3
1,219,215 + HP15_1185 0.53 +0.5
1,219,221 - HP15_1185 0.54 +1.2
1,219,269 - HP15_1185 0.61 -0.4
1,219,310 + HP15_1185 0.66 -0.2
1,219,310 + HP15_1185 0.66 -0.1
1,219,555 + +1.5
1,219,566 + +0.0
1,219,566 + -0.3
1,219,623 + +1.2
1,219,699 - -1.5
1,219,830 + -0.2
1,220,014 + HP15_1186 0.16 +1.2
1,220,020 - HP15_1186 0.16 +0.5
1,220,058 + HP15_1186 0.18 +1.9
1,220,128 + HP15_1186 0.21 +0.9
1,220,157 + HP15_1186 0.22 +0.5
1,220,157 + HP15_1186 0.22 +1.3
1,220,162 + HP15_1186 0.23 +0.7
1,220,165 - HP15_1186 0.23 +0.3
1,220,212 - HP15_1186 0.25 +0.8
1,220,223 + HP15_1186 0.25 -1.3
1,220,392 + HP15_1186 0.33 -0.0
1,220,565 + HP15_1186 0.41 +1.1
1,220,571 + HP15_1186 0.41 +1.2
1,220,756 + HP15_1186 0.50 +0.7
1,220,909 - HP15_1186 0.57 +0.3
1,220,911 - HP15_1186 0.57 +0.4
1,221,021 - HP15_1186 0.62 +0.7
1,221,110 - HP15_1186 0.66 -0.0
1,221,168 + HP15_1186 0.69 +1.2
1,221,168 + HP15_1186 0.69 +0.1
1,221,197 - HP15_1186 0.70 +0.2
1,221,204 + HP15_1186 0.70 +0.6
1,221,206 - HP15_1186 0.70 +1.0
1,221,238 + HP15_1186 0.72 +1.2
1,221,266 - HP15_1186 0.73 +0.5
1,221,365 + HP15_1186 0.78 +0.9
1,221,378 - HP15_1186 0.78 +1.0
1,221,405 + HP15_1186 0.79 +0.3
1,221,428 + HP15_1186 0.80 +1.6
1,221,547 + HP15_1186 0.86 +0.6
1,221,594 - HP15_1186 0.88 -1.4
1,221,598 + HP15_1186 0.88 -1.1
1,221,678 + +0.3
1,221,678 + +0.7
1,221,784 + -1.0
1,221,789 + +1.5
1,221,807 - +0.8
1,221,857 + +0.7
1,221,922 - -0.4
1,221,933 + -0.8
1,221,950 - +1.3
1,222,013 + +0.4
1,222,108 - -0.1
1,222,113 - -0.4
1,222,171 - HP15_1187 0.11 +0.2
1,222,179 - HP15_1187 0.13 +1.5
1,222,553 - HP15_1188 0.11 -0.7
1,222,553 - HP15_1188 0.11 +0.7
1,222,586 + HP15_1188 0.16 +0.9
1,222,689 + HP15_1188 0.33 +1.3
1,222,734 - HP15_1188 0.40 +2.5

Or see this region's nucleotide sequence