Strain Fitness in Marinobacter adhaerens HP15 around HP15_1135

Experiment: m.b. Benzethonium chloride 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1133 and HP15_1134 are separated by 245 nucleotidesHP15_1134 and HP15_1135 are separated by 286 nucleotidesHP15_1135 and HP15_1136 are separated by 5 nucleotidesHP15_1136 and HP15_1137 are separated by 1 nucleotides HP15_1133: HP15_1133 - protein containing DUF785, at 1,162,424 to 1,163,122 _1133 HP15_1134: HP15_1134 - conserved hypothetical protein, at 1,163,368 to 1,163,757 _1134 HP15_1135: HP15_1135 - DNA recombination protein RmuC, at 1,164,044 to 1,165,519 _1135 HP15_1136: HP15_1136 - protein containing tetratricopeptide repeat protein, at 1,165,525 to 1,166,379 _1136 HP15_1137: HP15_1137 - helix-turn-helix domain containing protein, AraC type, at 1,166,381 to 1,167,412 _1137 Position (kb) 1164 1165 1166Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1163.085 kb on + strandat 1163.104 kb on + strandat 1163.152 kb on + strandat 1163.192 kb on - strandat 1163.236 kb on - strandat 1163.236 kb on - strandat 1163.236 kb on - strandat 1163.304 kb on + strandat 1163.307 kb on - strandat 1163.356 kb on - strandat 1163.364 kb on - strandat 1163.366 kb on - strandat 1163.539 kb on + strand, within HP15_1134at 1163.547 kb on - strand, within HP15_1134at 1163.573 kb on + strand, within HP15_1134at 1163.573 kb on + strand, within HP15_1134at 1163.583 kb on + strand, within HP15_1134at 1163.645 kb on + strand, within HP15_1134at 1163.672 kb on - strand, within HP15_1134at 1163.679 kb on + strand, within HP15_1134at 1163.692 kb on + strand, within HP15_1134at 1163.792 kb on + strandat 1163.908 kb on + strandat 1163.945 kb on - strandat 1164.169 kb on - strandat 1164.238 kb on - strand, within HP15_1135at 1164.240 kb on + strand, within HP15_1135at 1164.240 kb on + strand, within HP15_1135at 1164.248 kb on - strand, within HP15_1135at 1164.490 kb on + strand, within HP15_1135at 1164.599 kb on - strand, within HP15_1135at 1164.635 kb on - strand, within HP15_1135at 1164.672 kb on + strand, within HP15_1135at 1164.713 kb on - strand, within HP15_1135at 1164.738 kb on + strand, within HP15_1135at 1164.930 kb on - strand, within HP15_1135at 1165.005 kb on + strand, within HP15_1135at 1165.097 kb on + strand, within HP15_1135at 1165.165 kb on + strand, within HP15_1135at 1165.279 kb on + strand, within HP15_1135at 1165.285 kb on - strand, within HP15_1135at 1165.327 kb on - strand, within HP15_1135at 1165.327 kb on - strand, within HP15_1135at 1165.544 kb on - strandat 1165.634 kb on + strand, within HP15_1136at 1165.654 kb on - strand, within HP15_1136at 1165.671 kb on + strand, within HP15_1136at 1165.679 kb on - strand, within HP15_1136at 1165.861 kb on - strand, within HP15_1136at 1165.921 kb on - strand, within HP15_1136at 1166.211 kb on + strand, within HP15_1136at 1166.250 kb on - strand, within HP15_1136at 1166.264 kb on + strand, within HP15_1136at 1166.270 kb on + strand, within HP15_1136at 1166.272 kb on - strand, within HP15_1136

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
remove
1,163,085 + -0.8
1,163,104 + +0.2
1,163,152 + -2.2
1,163,192 - -0.0
1,163,236 - +0.7
1,163,236 - -2.0
1,163,236 - -0.4
1,163,304 + +0.6
1,163,307 - -0.4
1,163,356 - -0.1
1,163,364 - +0.7
1,163,366 - -0.8
1,163,539 + HP15_1134 0.44 +0.3
1,163,547 - HP15_1134 0.46 -0.4
1,163,573 + HP15_1134 0.53 +0.2
1,163,573 + HP15_1134 0.53 +0.4
1,163,583 + HP15_1134 0.55 -0.4
1,163,645 + HP15_1134 0.71 +0.0
1,163,672 - HP15_1134 0.78 -0.7
1,163,679 + HP15_1134 0.80 +0.4
1,163,692 + HP15_1134 0.83 -2.8
1,163,792 + -3.6
1,163,908 + +0.5
1,163,945 - +1.2
1,164,169 - +0.1
1,164,238 - HP15_1135 0.13 +1.9
1,164,240 + HP15_1135 0.13 -0.3
1,164,240 + HP15_1135 0.13 +1.3
1,164,248 - HP15_1135 0.14 +0.4
1,164,490 + HP15_1135 0.30 +0.7
1,164,599 - HP15_1135 0.38 +0.6
1,164,635 - HP15_1135 0.40 -1.1
1,164,672 + HP15_1135 0.43 -0.7
1,164,713 - HP15_1135 0.45 -3.0
1,164,738 + HP15_1135 0.47 +1.2
1,164,930 - HP15_1135 0.60 +0.1
1,165,005 + HP15_1135 0.65 +0.5
1,165,097 + HP15_1135 0.71 +1.0
1,165,165 + HP15_1135 0.76 +1.0
1,165,279 + HP15_1135 0.84 -1.6
1,165,285 - HP15_1135 0.84 -2.4
1,165,327 - HP15_1135 0.87 +1.0
1,165,327 - HP15_1135 0.87 +1.1
1,165,544 - +0.3
1,165,634 + HP15_1136 0.13 +1.6
1,165,654 - HP15_1136 0.15 +1.3
1,165,671 + HP15_1136 0.17 +0.6
1,165,679 - HP15_1136 0.18 -2.8
1,165,861 - HP15_1136 0.39 +0.3
1,165,921 - HP15_1136 0.46 +1.1
1,166,211 + HP15_1136 0.80 +1.4
1,166,250 - HP15_1136 0.85 -0.4
1,166,264 + HP15_1136 0.86 -0.3
1,166,270 + HP15_1136 0.87 -0.8
1,166,272 - HP15_1136 0.87 -0.1

Or see this region's nucleotide sequence