Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03234

Experiment: PYE_noCalcium 30C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 30C survival rep2 12 days
3,398,068	+		CCNA_03233	0.30	-2.7
3,398,094	-		CCNA_03233	0.32	-1.6
3,398,188	+		CCNA_03233	0.39	-0.8
3,398,188	+		CCNA_03233	0.39	+0.3
3,398,207	-		CCNA_03233	0.40	-2.8
3,398,262	-		CCNA_03233	0.44	-2.1
3,398,264	+		CCNA_03233	0.44	+0.0
3,398,348	-		CCNA_03233	0.50	-2.1
3,398,524	-		CCNA_03233	0.63	-1.0
3,398,594	+		CCNA_03233	0.68	+0.3
3,398,602	-		CCNA_03233	0.68	-1.7
3,398,602	-		CCNA_03233	0.68	-2.6
3,398,634	-		CCNA_03233	0.71	-3.4
3,398,634	-		CCNA_03233	0.71	-1.8
3,398,699	+		CCNA_03233	0.75	+1.3
3,398,699	+		CCNA_03233	0.75	-1.2
3,398,707	-		CCNA_03233	0.76	-0.8
3,398,734	-		CCNA_03233	0.78	-3.8
3,398,740	+		CCNA_03233	0.78	-2.9
3,398,740	+		CCNA_03233	0.78	+2.3
3,398,749	-		CCNA_03233	0.79	-1.7
3,398,763	+		CCNA_03233	0.80	+2.3
3,398,763	+		CCNA_03233	0.80	-0.7
3,398,783	-		CCNA_03233	0.81	-3.6
3,398,801	-		CCNA_03233	0.82	-2.0
3,398,819	+		CCNA_03233	0.84	-1.1
3,398,822	-		CCNA_03233	0.84	+0.3
3,398,848	-		CCNA_03233	0.86	-1.8
3,398,855	+		CCNA_03233	0.86	+1.3
3,398,855	+		CCNA_03233	0.86	-0.5
3,398,855	+		CCNA_03233	0.86	-1.2
3,398,855	+		CCNA_03233	0.86	+0.3
3,398,855	+		CCNA_03233	0.86	-0.5
3,398,855	+		CCNA_03233	0.86	-0.2
3,398,855	+		CCNA_03233	0.86	-1.5
3,398,855	+		CCNA_03233	0.86	+1.3
3,398,863	-		CCNA_03233	0.87	-4.1
3,398,863	-		CCNA_03233	0.87	-1.1
3,398,863	-		CCNA_03233	0.87	-2.0
3,398,863	-		CCNA_03233	0.87	-2.1
3,398,863	-		CCNA_03233	0.87	-0.2
3,398,924	+				-1.4
3,398,947	+				+0.0
3,398,979	+				-0.5
3,398,984	+				+0.3
3,398,995	+				+0.8
3,399,003	+				-0.7
3,399,054	+				-0.8
3,399,061	+				+1.3
3,399,061	+				+1.3
3,399,069	-				-1.4
3,399,073	+				+0.8
3,399,091	-				+1.4
3,399,145	+		CCNA_03234	0.11	+0.8
3,399,157	+		CCNA_03234	0.12	+0.8
3,399,244	+		CCNA_03234	0.24	+1.8
3,399,244	-		CCNA_03234	0.24	+0.6
3,399,248	+		CCNA_03234	0.25	+0.9
3,399,253	-		CCNA_03234	0.25	+0.5
3,399,266	+		CCNA_03234	0.27	-1.1
3,399,274	-		CCNA_03234	0.28	+2.1
3,399,274	-		CCNA_03234	0.28	+1.7
3,399,276	-		CCNA_03234	0.28	+0.5
3,399,303	-		CCNA_03234	0.32	+0.4
3,399,311	-		CCNA_03234	0.33	-2.3
3,399,316	+		CCNA_03234	0.34	-0.1
3,399,324	-		CCNA_03234	0.35	-1.0
3,399,324	-		CCNA_03234	0.35	-0.3
3,399,324	-		CCNA_03234	0.35	-1.2
3,399,324	-		CCNA_03234	0.35	-0.8
3,399,326	-		CCNA_03234	0.35	-1.8
3,399,382	+		CCNA_03234	0.42	-1.8
3,399,390	-		CCNA_03234	0.43	+2.3
3,399,408	+		CCNA_03234	0.46	+0.3
3,399,416	-		CCNA_03234	0.47	-1.1
3,399,455	+		CCNA_03234	0.52	+1.2
3,399,472	+		CCNA_03234	0.54	-1.0
3,399,499	+		CCNA_03234	0.58	-0.8
3,399,504	+		CCNA_03234	0.59	-1.0
3,399,515	+		CCNA_03234	0.60	-0.2
3,399,515	+		CCNA_03234	0.60	-1.0
3,399,515	+		CCNA_03234	0.60	+0.3
3,399,518	-		CCNA_03234	0.61	+0.8
3,399,523	-		CCNA_03234	0.61	-1.4
3,399,523	-		CCNA_03234	0.61	+1.9
3,399,551	+		CCNA_03234	0.65	-0.7
3,399,614	-		CCNA_03234	0.73	-0.6
3,399,627	+		CCNA_03234	0.75	-1.5
3,399,627	+		CCNA_03234	0.75	-2.0
3,399,635	-		CCNA_03234	0.76	+2.1
3,399,635	-		CCNA_03234	0.76	-1.3
3,399,635	-		CCNA_03234	0.76	+0.8
3,399,674	-		CCNA_03234	0.81	-1.8
3,399,688	+		CCNA_03234	0.83	-3.5
3,399,696	-		CCNA_03234	0.84	-0.8
3,399,723	-		CCNA_03234	0.88	+0.2
3,399,723	-		CCNA_03234	0.88	+1.1
3,399,749	+				-1.4
3,399,749	+				-0.5
3,399,781	-				-0.9
3,399,790	-				-2.6
3,399,808	+				-1.4
3,399,822	-				+1.9
3,399,832	-				-0.9
3,399,832	-				-0.6
3,399,832	-				-1.2
3,399,834	-				+0.4
3,399,857	-				+0.5
3,399,867	+				-1.8
3,399,867	+				+0.8
3,399,877	+				+1.3
3,399,877	+				+1.3
3,399,877	+				-0.2
3,399,884	+				-0.8
3,399,885	-				-0.6
3,399,885	-				+1.9
3,399,885	-				+1.0
3,399,930	-				-1.1
3,399,952	-		CCNA_03235	0.12	+1.0
3,399,993	+		CCNA_03235	0.15	-0.5
3,400,001	-		CCNA_03235	0.16	-1.4
3,400,003	+		CCNA_03235	0.16	-0.2
3,400,021	-		CCNA_03235	0.18	+0.4
3,400,049	+		CCNA_03235	0.20	-1.4
3,400,067	-		CCNA_03235	0.22	-0.3
3,400,095	+		CCNA_03235	0.24	+0.8
3,400,142	+		CCNA_03235	0.28	-0.5
3,400,182	-		CCNA_03235	0.32	-0.2
3,400,206	+		CCNA_03235	0.34	+1.3
3,400,227	+		CCNA_03235	0.36	+1.3
3,400,263	+		CCNA_03235	0.39	-2.2
3,400,264	+		CCNA_03235	0.39	+1.3
3,400,294	+		CCNA_03235	0.42	+0.4
3,400,310	-		CCNA_03235	0.43	+2.3
3,400,315	-		CCNA_03235	0.43	-2.3
3,400,315	-		CCNA_03235	0.43	-0.0
3,400,328	+		CCNA_03235	0.45	-1.1
3,400,342	-		CCNA_03235	0.46	+0.8
3,400,349	-		CCNA_03235	0.46	+0.8
3,400,349	-		CCNA_03235	0.46	+0.0
3,400,359	-		CCNA_03235	0.47	-1.2
3,400,374	-		CCNA_03235	0.49	+0.3
3,400,380	-		CCNA_03235	0.49	+2.3
3,400,398	+		CCNA_03235	0.51	-0.2
3,400,398	+		CCNA_03235	0.51	+0.8
3,400,398	+		CCNA_03235	0.51	+1.3
3,400,398	+		CCNA_03235	0.51	+0.2
3,400,398	+		CCNA_03235	0.51	-1.1
3,400,400	+		CCNA_03235	0.51	+0.0
3,400,406	-		CCNA_03235	0.51	-1.4
3,400,406	-		CCNA_03235	0.51	+0.8
3,400,406	-		CCNA_03235	0.51	-0.3
3,400,406	-		CCNA_03235	0.51	+0.1
3,400,406	-		CCNA_03235	0.51	-0.7
3,400,406	-		CCNA_03235	0.51	-0.0
3,400,406	-		CCNA_03235	0.51	+0.7
3,400,410	+		CCNA_03235	0.52	+1.3
3,400,437	-		CCNA_03235	0.54	-0.3
3,400,457	+		CCNA_03235	0.56	-0.9
3,400,458	+		CCNA_03235	0.56	-0.2
3,400,468	+		CCNA_03235	0.57	-0.1
3,400,487	-		CCNA_03235	0.58	-1.6
3,400,487	-		CCNA_03235	0.58	-1.0
3,400,489	+		CCNA_03235	0.59	+0.5
3,400,489	+		CCNA_03235	0.59	+0.5
3,400,532	-		CCNA_03235	0.62	+0.0
3,400,534	+		CCNA_03235	0.62	-0.1
3,400,539	+		CCNA_03235	0.63	+0.5
3,400,539	+		CCNA_03235	0.63	-0.6
3,400,539	+		CCNA_03235	0.63	+0.6
3,400,542	-		CCNA_03235	0.63	-0.7
3,400,547	-		CCNA_03235	0.64	-1.2
3,400,547	-		CCNA_03235	0.64	+0.0
3,400,574	+		CCNA_03235	0.66	+1.1
3,400,580	-		CCNA_03235	0.66	-0.9
3,400,608	+		CCNA_03235	0.69	-0.7
3,400,616	-		CCNA_03235	0.70	-0.5
3,400,616	-		CCNA_03235	0.70	+0.1
3,400,659	+		CCNA_03235	0.73	+0.4
3,400,675	+		CCNA_03235	0.75	+1.9
3,400,677	+		CCNA_03235	0.75	-0.1
3,400,683	-		CCNA_03235	0.75	+0.1
3,400,683	-		CCNA_03235	0.75	+0.3
3,400,693	-		CCNA_03235	0.76	-0.2
3,400,720	+		CCNA_03235	0.79	-0.5
3,400,733	+		CCNA_03235	0.80	-1.1
3,400,736	-		CCNA_03235	0.80	+0.7
3,400,756	+		CCNA_03235	0.82	+1.0