Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01380

Experiment: PYE_noCalcium 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01379 and CCNA_01380 are separated by 128 nucleotidesCCNA_01380 and CCNA_01381 are separated by 126 nucleotides CCNA_01379: CCNA_01379 - type I secretion outer membrane protein rsaFb, at 1,493,232 to 1,494,683 _01379 CCNA_01380: CCNA_01380 - pole-organizing protein popZ, at 1,494,812 to 1,495,345 _01380 CCNA_01381: CCNA_01381 - valyl-tRNA synthetase, at 1,495,472 to 1,498,192 _01381 Position (kb) 1494 1495 1496Strain fitness (log2 ratio) -2 -1 0 1 2at 1493.851 kb on + strand, within CCNA_01379at 1493.880 kb on + strand, within CCNA_01379at 1493.983 kb on + strand, within CCNA_01379at 1494.005 kb on + strand, within CCNA_01379at 1494.038 kb on - strand, within CCNA_01379at 1494.066 kb on + strand, within CCNA_01379at 1494.189 kb on + strand, within CCNA_01379at 1494.199 kb on + strand, within CCNA_01379at 1494.225 kb on + strand, within CCNA_01379at 1494.239 kb on + strand, within CCNA_01379at 1494.256 kb on + strand, within CCNA_01379at 1494.282 kb on + strand, within CCNA_01379at 1494.289 kb on - strand, within CCNA_01379at 1494.321 kb on + strand, within CCNA_01379at 1494.430 kb on + strand, within CCNA_01379at 1494.440 kb on + strand, within CCNA_01379at 1494.440 kb on + strand, within CCNA_01379at 1494.448 kb on - strand, within CCNA_01379at 1494.501 kb on + strand, within CCNA_01379at 1494.517 kb on - strand, within CCNA_01379at 1494.683 kb on + strandat 1494.718 kb on - strandat 1494.748 kb on - strandat 1495.015 kb on + strand, within CCNA_01380at 1495.198 kb on + strand, within CCNA_01380at 1495.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep2 12 days
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1,493,851 + CCNA_01379 0.43 -1.3
1,493,880 + CCNA_01379 0.45 -1.8
1,493,983 + CCNA_01379 0.52 -0.6
1,494,005 + CCNA_01379 0.53 -0.7
1,494,038 - CCNA_01379 0.56 +2.6
1,494,066 + CCNA_01379 0.57 +0.6
1,494,189 + CCNA_01379 0.66 +1.6
1,494,199 + CCNA_01379 0.67 -0.7
1,494,225 + CCNA_01379 0.68 +0.3
1,494,239 + CCNA_01379 0.69 -0.2
1,494,256 + CCNA_01379 0.71 -2.4
1,494,282 + CCNA_01379 0.72 -2.1
1,494,289 - CCNA_01379 0.73 +2.6
1,494,321 + CCNA_01379 0.75 -1.4
1,494,430 + CCNA_01379 0.83 +1.0
1,494,440 + CCNA_01379 0.83 -1.3
1,494,440 + CCNA_01379 0.83 +0.6
1,494,448 - CCNA_01379 0.84 +1.6
1,494,501 + CCNA_01379 0.87 -2.1
1,494,517 - CCNA_01379 0.88 +2.6
1,494,683 + +0.6
1,494,718 - +1.0
1,494,748 - +2.6
1,495,015 + CCNA_01380 0.38 +0.0
1,495,198 + CCNA_01380 0.72 +0.0
1,495,326 - +0.6

Or see this region's nucleotide sequence