Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00880

Experiment: PYE_noCalcium 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00879 and CCNA_00880 are separated by 319 nucleotidesCCNA_00880 and CCNA_00881 overlap by 4 nucleotidesCCNA_00881 and CCNA_00882 are separated by 155 nucleotides CCNA_00879: CCNA_00879 - PAS-family sensor histidine kinase, at 956,807 to 959,071 _00879 CCNA_00880: CCNA_00880 - hypothetical protein, at 959,391 to 960,950 _00880 CCNA_00881: CCNA_00881 - ABC transporter ATP-binding protein, at 960,947 to 961,699 _00881 CCNA_00882: CCNA_00882 - hypothetical protein, at 961,855 to 962,853 _00882 Position (kb) 959 960 961Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 958.431 kb on - strand, within CCNA_00879at 958.431 kb on - strand, within CCNA_00879at 958.459 kb on - strand, within CCNA_00879at 958.523 kb on + strand, within CCNA_00879at 958.552 kb on - strand, within CCNA_00879at 958.552 kb on - strand, within CCNA_00879at 958.559 kb on + strand, within CCNA_00879at 958.564 kb on + strand, within CCNA_00879at 958.593 kb on + strand, within CCNA_00879at 958.593 kb on + strand, within CCNA_00879at 958.594 kb on + strand, within CCNA_00879at 958.594 kb on + strand, within CCNA_00879at 958.654 kb on - strand, within CCNA_00879at 958.671 kb on + strand, within CCNA_00879at 958.679 kb on - strand, within CCNA_00879at 958.706 kb on + strand, within CCNA_00879at 958.706 kb on + strand, within CCNA_00879at 958.728 kb on + strand, within CCNA_00879at 958.762 kb on + strand, within CCNA_00879at 958.770 kb on - strand, within CCNA_00879at 958.773 kb on + strand, within CCNA_00879at 958.783 kb on + strand, within CCNA_00879at 958.783 kb on + strand, within CCNA_00879at 958.783 kb on + strandat 958.783 kb on + strandat 958.783 kb on + strand, within CCNA_00879at 958.783 kb on + strand, within CCNA_00879at 958.783 kb on + strand, within CCNA_00879at 958.783 kb on + strand, within CCNA_00879at 958.783 kb on + strand, within CCNA_00879at 958.783 kb on + strand, within CCNA_00879at 958.790 kb on + strand, within CCNA_00879at 958.791 kb on - strand, within CCNA_00879at 958.791 kb on - strand, within CCNA_00879at 958.791 kb on - strand, within CCNA_00879at 958.791 kb on - strand, within CCNA_00879at 958.791 kb on - strand, within CCNA_00879at 958.791 kb on - strand, within CCNA_00879at 958.791 kb on - strand, within CCNA_00879at 958.791 kb on - strand, within CCNA_00879at 958.793 kb on - strand, within CCNA_00879at 958.822 kb on + strand, within CCNA_00879at 958.825 kb on - strand, within CCNA_00879at 958.825 kb on - strand, within CCNA_00879at 958.840 kb on + strand, within CCNA_00879at 958.870 kb on - strandat 958.870 kb on - strandat 958.901 kb on + strandat 958.906 kb on + strandat 958.906 kb on + strandat 958.906 kb on + strandat 958.909 kb on - strandat 958.909 kb on - strandat 958.914 kb on - strandat 958.914 kb on - strandat 958.943 kb on + strandat 958.951 kb on - strandat 958.951 kb on - strandat 959.034 kb on - strandat 959.035 kb on - strandat 959.038 kb on + strandat 959.046 kb on - strandat 959.051 kb on - strandat 959.059 kb on + strandat 959.059 kb on + strandat 959.059 kb on + strandat 959.067 kb on - strandat 959.067 kb on - strandat 959.073 kb on - strandat 959.089 kb on - strandat 959.184 kb on + strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.197 kb on + strandat 959.197 kb on + strandat 959.218 kb on + strandat 959.236 kb on + strandat 959.246 kb on + strandat 959.262 kb on - strandat 959.298 kb on - strandat 959.316 kb on - strandat 959.411 kb on - strandat 959.455 kb on + strandat 959.463 kb on - strandat 959.463 kb on - strandat 959.512 kb on + strandat 959.548 kb on + strand, within CCNA_00880at 959.548 kb on + strand, within CCNA_00880at 959.551 kb on - strand, within CCNA_00880at 959.648 kb on - strand, within CCNA_00880at 959.688 kb on - strand, within CCNA_00880at 959.697 kb on - strand, within CCNA_00880at 959.712 kb on + strand, within CCNA_00880at 959.715 kb on - strand, within CCNA_00880at 959.715 kb on - strand, within CCNA_00880at 959.720 kb on - strand, within CCNA_00880at 959.720 kb on - strand, within CCNA_00880at 959.759 kb on + strand, within CCNA_00880at 959.766 kb on + strand, within CCNA_00880at 959.767 kb on - strand, within CCNA_00880at 959.806 kb on - strand, within CCNA_00880at 959.820 kb on - strand, within CCNA_00880at 959.827 kb on - strand, within CCNA_00880at 959.875 kb on - strand, within CCNA_00880at 959.966 kb on - strand, within CCNA_00880at 959.990 kb on - strand, within CCNA_00880at 959.990 kb on - strand, within CCNA_00880at 959.997 kb on + strand, within CCNA_00880at 960.010 kb on - strand, within CCNA_00880at 960.054 kb on - strand, within CCNA_00880at 960.062 kb on - strand, within CCNA_00880at 960.078 kb on - strand, within CCNA_00880at 960.158 kb on - strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.181 kb on - strand, within CCNA_00880at 960.181 kb on - strand, within CCNA_00880at 960.181 kb on - strand, within CCNA_00880at 960.181 kb on - strand, within CCNA_00880at 960.231 kb on - strand, within CCNA_00880at 960.247 kb on - strand, within CCNA_00880at 960.278 kb on + strand, within CCNA_00880at 960.279 kb on + strand, within CCNA_00880at 960.287 kb on - strand, within CCNA_00880at 960.287 kb on - strand, within CCNA_00880at 960.331 kb on + strand, within CCNA_00880at 960.339 kb on - strand, within CCNA_00880at 960.351 kb on + strand, within CCNA_00880at 960.359 kb on - strand, within CCNA_00880at 960.359 kb on - strand, within CCNA_00880at 960.369 kb on - strand, within CCNA_00880at 960.374 kb on - strand, within CCNA_00880at 960.392 kb on + strand, within CCNA_00880at 960.394 kb on + strand, within CCNA_00880at 960.394 kb on - strand, within CCNA_00880at 960.409 kb on + strand, within CCNA_00880at 960.417 kb on - strand, within CCNA_00880at 960.436 kb on + strand, within CCNA_00880at 960.440 kb on + strand, within CCNA_00880at 960.462 kb on + strand, within CCNA_00880at 960.477 kb on + strandat 960.483 kb on - strand, within CCNA_00880at 960.494 kb on + strand, within CCNA_00880at 960.497 kb on - strand, within CCNA_00880at 960.512 kb on - strand, within CCNA_00880at 960.514 kb on + strand, within CCNA_00880at 960.584 kb on + strand, within CCNA_00880at 960.593 kb on - strand, within CCNA_00880at 960.593 kb on - strand, within CCNA_00880at 960.615 kb on - strand, within CCNA_00880at 960.623 kb on + strand, within CCNA_00880at 960.642 kb on + strand, within CCNA_00880at 960.650 kb on - strand, within CCNA_00880at 960.665 kb on - strand, within CCNA_00880at 960.688 kb on + strand, within CCNA_00880at 960.696 kb on - strand, within CCNA_00880at 960.696 kb on - strand, within CCNA_00880at 960.722 kb on + strand, within CCNA_00880at 960.730 kb on - strand, within CCNA_00880at 960.834 kb on + strandat 960.834 kb on + strandat 960.842 kb on - strandat 960.842 kb on - strandat 960.842 kb on - strandat 960.864 kb on + strandat 960.888 kb on + strandat 960.946 kb on + strandat 960.952 kb on + strandat 960.963 kb on + strandat 961.019 kb on + strandat 961.086 kb on + strand, within CCNA_00881at 961.086 kb on + strand, within CCNA_00881at 961.094 kb on - strand, within CCNA_00881at 961.116 kb on - strand, within CCNA_00881at 961.151 kb on + strand, within CCNA_00881at 961.164 kb on + strand, within CCNA_00881at 961.190 kb on + strand, within CCNA_00881at 961.199 kb on + strand, within CCNA_00881at 961.207 kb on - strand, within CCNA_00881at 961.207 kb on - strand, within CCNA_00881at 961.207 kb on - strand, within CCNA_00881at 961.208 kb on - strand, within CCNA_00881at 961.217 kb on + strand, within CCNA_00881at 961.233 kb on - strand, within CCNA_00881at 961.246 kb on - strand, within CCNA_00881at 961.260 kb on + strand, within CCNA_00881at 961.275 kb on - strand, within CCNA_00881at 961.301 kb on - strand, within CCNA_00881at 961.318 kb on + strand, within CCNA_00881at 961.326 kb on - strand, within CCNA_00881at 961.328 kb on + strand, within CCNA_00881at 961.337 kb on - strand, within CCNA_00881at 961.344 kb on + strand, within CCNA_00881at 961.344 kb on + strand, within CCNA_00881at 961.344 kb on + strand, within CCNA_00881at 961.344 kb on + strand, within CCNA_00881at 961.344 kb on + strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.365 kb on + strand, within CCNA_00881at 961.403 kb on + strand, within CCNA_00881at 961.451 kb on + strand, within CCNA_00881at 961.462 kb on - strand, within CCNA_00881at 961.529 kb on + strand, within CCNA_00881at 961.529 kb on + strand, within CCNA_00881at 961.536 kb on - strand, within CCNA_00881at 961.554 kb on + strand, within CCNA_00881at 961.569 kb on + strand, within CCNA_00881at 961.574 kb on + strand, within CCNA_00881at 961.590 kb on + strandat 961.595 kb on + strand, within CCNA_00881at 961.598 kb on - strand, within CCNA_00881at 961.603 kb on - strand, within CCNA_00881at 961.618 kb on + strand, within CCNA_00881at 961.646 kb on - strandat 961.646 kb on - strandat 961.646 kb on - strandat 961.646 kb on - strandat 961.658 kb on - strandat 961.677 kb on - strandat 961.682 kb on + strandat 961.690 kb on - strandat 961.702 kb on - strandat 961.714 kb on - strandat 961.733 kb on - strandat 961.743 kb on + strandat 961.828 kb on - strandat 961.848 kb on - strandat 961.853 kb on + strandat 961.861 kb on - strandat 961.861 kb on - strandat 961.879 kb on + strandat 961.889 kb on + strandat 961.903 kb on - strandat 961.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep2 12 days
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958,431 - CCNA_00879 0.72 -1.2
958,431 - CCNA_00879 0.72 -0.6
958,459 - CCNA_00879 0.73 -0.2
958,523 + CCNA_00879 0.76 -0.8
958,552 - CCNA_00879 0.77 +2.4
958,552 - CCNA_00879 0.77 -0.0
958,559 + CCNA_00879 0.77 -1.3
958,564 + CCNA_00879 0.78 +0.3
958,593 + CCNA_00879 0.79 -0.8
958,593 + CCNA_00879 0.79 +0.5
958,594 + CCNA_00879 0.79 +0.9
958,594 + CCNA_00879 0.79 +1.0
958,654 - CCNA_00879 0.82 -0.3
958,671 + CCNA_00879 0.82 -1.1
958,679 - CCNA_00879 0.83 +1.0
958,706 + CCNA_00879 0.84 +0.2
958,706 + CCNA_00879 0.84 -0.1
958,728 + CCNA_00879 0.85 -1.1
958,762 + CCNA_00879 0.86 -0.3
958,770 - CCNA_00879 0.87 +0.1
958,773 + CCNA_00879 0.87 +0.9
958,783 + CCNA_00879 0.87 +0.3
958,783 + CCNA_00879 0.87 +0.2
958,783 + +0.4
958,783 + +0.8
958,783 + CCNA_00879 0.87 -0.8
958,783 + CCNA_00879 0.87 +1.1
958,783 + CCNA_00879 0.87 +0.0
958,783 + CCNA_00879 0.87 -0.9
958,783 + CCNA_00879 0.87 -1.3
958,783 + CCNA_00879 0.87 -0.2
958,790 + CCNA_00879 0.88 +0.2
958,791 - CCNA_00879 0.88 -0.1
958,791 - CCNA_00879 0.88 +0.2
958,791 - CCNA_00879 0.88 -0.2
958,791 - CCNA_00879 0.88 +0.8
958,791 - CCNA_00879 0.88 -0.5
958,791 - CCNA_00879 0.88 -0.3
958,791 - CCNA_00879 0.88 -2.0
958,791 - CCNA_00879 0.88 -0.1
958,793 - CCNA_00879 0.88 +0.1
958,822 + CCNA_00879 0.89 +0.7
958,825 - CCNA_00879 0.89 -2.2
958,825 - CCNA_00879 0.89 -0.8
958,840 + CCNA_00879 0.90 +0.4
958,870 - -1.8
958,870 - -1.6
958,901 + +0.4
958,906 + -0.8
958,906 + +0.1
958,906 + +0.8
958,909 - -0.7
958,909 - -1.5
958,914 - +0.2
958,914 - -0.7
958,943 + +0.1
958,951 - +0.1
958,951 - +0.4
959,034 - +0.2
959,035 - -1.2
959,038 + -0.0
959,046 - -0.3
959,051 - -0.4
959,059 + +0.5
959,059 + -0.6
959,059 + +0.8
959,067 - +0.3
959,067 - +1.0
959,073 - +1.4
959,089 - +0.8
959,184 + -0.0
959,187 + +0.5
959,187 + +0.3
959,197 + -0.4
959,197 + +1.1
959,218 + -0.4
959,236 + -0.2
959,246 + +0.7
959,262 - +0.7
959,298 - -0.8
959,316 - +0.2
959,411 - +0.6
959,455 + +0.4
959,463 - -2.3
959,463 - -0.5
959,512 + +0.8
959,548 + CCNA_00880 0.10 -1.1
959,548 + CCNA_00880 0.10 -1.8
959,551 - CCNA_00880 0.10 -0.2
959,648 - CCNA_00880 0.16 +0.3
959,688 - CCNA_00880 0.19 -0.4
959,697 - CCNA_00880 0.20 +0.0
959,712 + CCNA_00880 0.21 -1.1
959,715 - CCNA_00880 0.21 -0.9
959,715 - CCNA_00880 0.21 -0.8
959,720 - CCNA_00880 0.21 +0.0
959,720 - CCNA_00880 0.21 +2.4
959,759 + CCNA_00880 0.24 -2.0
959,766 + CCNA_00880 0.24 +0.2
959,767 - CCNA_00880 0.24 -1.8
959,806 - CCNA_00880 0.27 -1.7
959,820 - CCNA_00880 0.28 -1.2
959,827 - CCNA_00880 0.28 +1.1
959,875 - CCNA_00880 0.31 -1.0
959,966 - CCNA_00880 0.37 -1.0
959,990 - CCNA_00880 0.38 -1.2
959,990 - CCNA_00880 0.38 -0.7
959,997 + CCNA_00880 0.39 -2.1
960,010 - CCNA_00880 0.40 -0.9
960,054 - CCNA_00880 0.42 -0.7
960,062 - CCNA_00880 0.43 -0.4
960,078 - CCNA_00880 0.44 -1.3
960,158 - CCNA_00880 0.49 -1.7
960,173 + CCNA_00880 0.50 -1.0
960,173 + CCNA_00880 0.50 +0.6
960,173 + CCNA_00880 0.50 -0.1
960,173 + CCNA_00880 0.50 +1.4
960,173 + CCNA_00880 0.50 -1.9
960,173 + CCNA_00880 0.50 +0.0
960,181 - CCNA_00880 0.51 -0.7
960,181 - CCNA_00880 0.51 -2.2
960,181 - CCNA_00880 0.51 +1.2
960,181 - CCNA_00880 0.51 -2.7
960,231 - CCNA_00880 0.54 -2.0
960,247 - CCNA_00880 0.55 -1.8
960,278 + CCNA_00880 0.57 +1.4
960,279 + CCNA_00880 0.57 +1.6
960,287 - CCNA_00880 0.57 -1.3
960,287 - CCNA_00880 0.57 -2.1
960,331 + CCNA_00880 0.60 -0.2
960,339 - CCNA_00880 0.61 -0.8
960,351 + CCNA_00880 0.62 -0.6
960,359 - CCNA_00880 0.62 -2.0
960,359 - CCNA_00880 0.62 -0.4
960,369 - CCNA_00880 0.63 -0.1
960,374 - CCNA_00880 0.63 -0.9
960,392 + CCNA_00880 0.64 +0.4
960,394 + CCNA_00880 0.64 -0.4
960,394 - CCNA_00880 0.64 -1.1
960,409 + CCNA_00880 0.65 +0.8
960,417 - CCNA_00880 0.66 +0.4
960,436 + CCNA_00880 0.67 +0.4
960,440 + CCNA_00880 0.67 +0.5
960,462 + CCNA_00880 0.69 +2.4
960,477 + +2.4
960,483 - CCNA_00880 0.70 +0.6
960,494 + CCNA_00880 0.71 +0.4
960,497 - CCNA_00880 0.71 -1.3
960,512 - CCNA_00880 0.72 -2.0
960,514 + CCNA_00880 0.72 +2.4
960,584 + CCNA_00880 0.76 -0.8
960,593 - CCNA_00880 0.77 -1.9
960,593 - CCNA_00880 0.77 -1.4
960,615 - CCNA_00880 0.78 -0.9
960,623 + CCNA_00880 0.79 -0.5
960,642 + CCNA_00880 0.80 +0.8
960,650 - CCNA_00880 0.81 -2.2
960,665 - CCNA_00880 0.82 -1.0
960,688 + CCNA_00880 0.83 +0.4
960,696 - CCNA_00880 0.84 +1.0
960,696 - CCNA_00880 0.84 -2.0
960,722 + CCNA_00880 0.85 -0.6
960,730 - CCNA_00880 0.86 -1.7
960,834 + -1.1
960,834 + +0.8
960,842 - -0.3
960,842 - -0.6
960,842 - -0.8
960,864 + -0.4
960,888 + -0.2
960,946 + -1.0
960,952 + +0.4
960,963 + -1.7
961,019 + -1.1
961,086 + CCNA_00881 0.18 +1.4
961,086 + CCNA_00881 0.18 +0.8
961,094 - CCNA_00881 0.20 +0.1
961,116 - CCNA_00881 0.22 -0.3
961,151 + CCNA_00881 0.27 -0.2
961,164 + CCNA_00881 0.29 -0.6
961,190 + CCNA_00881 0.32 +0.0
961,199 + CCNA_00881 0.33 -0.6
961,207 - CCNA_00881 0.35 -0.1
961,207 - CCNA_00881 0.35 -1.8
961,207 - CCNA_00881 0.35 +0.8
961,208 - CCNA_00881 0.35 -1.7
961,217 + CCNA_00881 0.36 -2.3
961,233 - CCNA_00881 0.38 -1.4
961,246 - CCNA_00881 0.40 -1.0
961,260 + CCNA_00881 0.42 -0.8
961,275 - CCNA_00881 0.44 -1.2
961,301 - CCNA_00881 0.47 +0.0
961,318 + CCNA_00881 0.49 -0.1
961,326 - CCNA_00881 0.50 -1.0
961,328 + CCNA_00881 0.51 -1.1
961,337 - CCNA_00881 0.52 -0.6
961,344 + CCNA_00881 0.53 +1.4
961,344 + CCNA_00881 0.53 -1.0
961,344 + CCNA_00881 0.53 -1.3
961,344 + CCNA_00881 0.53 +0.8
961,344 + CCNA_00881 0.53 -2.2
961,352 - CCNA_00881 0.54 -1.1
961,352 - CCNA_00881 0.54 -0.6
961,352 - CCNA_00881 0.54 -1.0
961,352 - CCNA_00881 0.54 -0.4
961,352 - CCNA_00881 0.54 -1.1
961,352 - CCNA_00881 0.54 +1.8
961,352 - CCNA_00881 0.54 -1.3
961,352 - CCNA_00881 0.54 -0.6
961,365 + CCNA_00881 0.56 +0.4
961,403 + CCNA_00881 0.61 -0.4
961,451 + CCNA_00881 0.67 -1.5
961,462 - CCNA_00881 0.68 +0.8
961,529 + CCNA_00881 0.77 +1.0
961,529 + CCNA_00881 0.77 -2.4
961,536 - CCNA_00881 0.78 -0.2
961,554 + CCNA_00881 0.81 +4.0
961,569 + CCNA_00881 0.83 -1.2
961,574 + CCNA_00881 0.83 +0.0
961,590 + +1.4
961,595 + CCNA_00881 0.86 +0.8
961,598 - CCNA_00881 0.86 -1.5
961,603 - CCNA_00881 0.87 -1.1
961,618 + CCNA_00881 0.89 +1.0
961,646 - -1.6
961,646 - -0.6
961,646 - -2.3
961,646 - -0.2
961,658 - -1.2
961,677 - -0.5
961,682 + +1.4
961,690 - -0.2
961,702 - -0.2
961,714 - +4.0
961,733 - -1.0
961,743 + -0.6
961,828 - +0.3
961,848 - +0.4
961,853 + +2.4
961,861 - -0.8
961,861 - -1.7
961,879 + +0.9
961,889 + -0.4
961,903 - +0.4
961,942 - -1.3

Or see this region's nucleotide sequence