Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13505 and BWI76_RS13510 are separated by 171 nucleotides BWI76_RS13510 and BWI76_RS13515 are separated by 49 nucleotides BWI76_RS13515 and BWI76_RS13520 are separated by 267 nucleotides
BWI76_RS13505: BWI76_RS13505 - putative receptor, at 2,815,979 to 2,817,040
_RS13505
BWI76_RS13510: BWI76_RS13510 - YgdI/YgdR family lipoprotein, at 2,817,212 to 2,817,433
_RS13510
BWI76_RS13515: BWI76_RS13515 - amino acid permease, at 2,817,483 to 2,818,940
_RS13515
BWI76_RS13520: BWI76_RS13520 - hypothetical protein, at 2,819,208 to 2,819,747
_RS13520
Position (kb)
2817
2818
2819 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2816.490 kb on + strand, within BWI76_RS13505 at 2816.516 kb on + strand, within BWI76_RS13505 at 2816.838 kb on + strand at 2816.894 kb on - strand, within BWI76_RS13505 at 2816.938 kb on - strand at 2817.004 kb on + strand at 2817.049 kb on + strand at 2817.161 kb on - strand at 2817.188 kb on - strand at 2817.800 kb on - strand, within BWI76_RS13515 at 2817.956 kb on - strand, within BWI76_RS13515 at 2817.964 kb on + strand, within BWI76_RS13515 at 2818.049 kb on + strand, within BWI76_RS13515 at 2818.928 kb on + strand at 2819.035 kb on + strand at 2819.764 kb on + strand at 2819.772 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,816,490 + BWI76_RS13505 0.48 -0.1 2,816,516 + BWI76_RS13505 0.51 +1.5 2,816,838 + +1.8 2,816,894 - BWI76_RS13505 0.86 -0.3 2,816,938 - -0.1 2,817,004 + -0.4 2,817,049 + -2.2 2,817,161 - -0.1 2,817,188 - +0.4 2,817,800 - BWI76_RS13515 0.22 -1.1 2,817,956 - BWI76_RS13515 0.32 -0.4 2,817,964 + BWI76_RS13515 0.33 -1.8 2,818,049 + BWI76_RS13515 0.39 -0.8 2,818,928 + -0.6 2,819,035 + -0.4 2,819,764 + -0.1 2,819,772 - +0.1
Or see this region's nucleotide sequence