Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2567

Experiment: 3 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2566 and DvMF_2567 are separated by 8 nucleotidesDvMF_2567 and DvMF_2568 are separated by 97 nucleotides DvMF_2566: DvMF_2566 - phosphate ABC transporter, inner membrane subunit PstC (RefSeq), at 3,243,276 to 3,244,520 _2566 DvMF_2567: DvMF_2567 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,244,529 to 3,245,698 _2567 DvMF_2568: DvMF_2568 - filamentation induced by cAMP protein Fic (RefSeq), at 3,245,796 to 3,247,028 _2568 Position (kb) 3244 3245 3246Strain fitness (log2 ratio) -1 0 1 2at 3243.610 kb on - strand, within DvMF_2566at 3243.637 kb on - strand, within DvMF_2566at 3243.637 kb on - strand, within DvMF_2566at 3243.898 kb on - strand, within DvMF_2566at 3243.984 kb on + strand, within DvMF_2566at 3243.992 kb on - strand, within DvMF_2566at 3244.116 kb on - strand, within DvMF_2566at 3244.192 kb on - strand, within DvMF_2566at 3244.238 kb on - strand, within DvMF_2566at 3244.351 kb on + strand, within DvMF_2566at 3244.466 kb on + strandat 3244.730 kb on + strand, within DvMF_2567at 3244.735 kb on + strand, within DvMF_2567at 3244.749 kb on - strand, within DvMF_2567at 3244.834 kb on + strand, within DvMF_2567at 3244.869 kb on + strand, within DvMF_2567at 3244.909 kb on + strand, within DvMF_2567at 3244.941 kb on - strand, within DvMF_2567at 3244.970 kb on + strand, within DvMF_2567at 3245.001 kb on + strand, within DvMF_2567at 3245.268 kb on + strand, within DvMF_2567at 3245.460 kb on - strand, within DvMF_2567at 3245.653 kb on + strandat 3245.791 kb on + strandat 3245.855 kb on + strandat 3245.855 kb on + strandat 3245.878 kb on - strandat 3245.915 kb on - strandat 3245.977 kb on - strand, within DvMF_2568at 3246.247 kb on + strand, within DvMF_2568at 3246.516 kb on + strand, within DvMF_2568at 3246.630 kb on - strand, within DvMF_2568

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3 day starvation, 37C
remove
3,243,610 - DvMF_2566 0.27 +0.2
3,243,637 - DvMF_2566 0.29 +0.7
3,243,637 - DvMF_2566 0.29 +0.2
3,243,898 - DvMF_2566 0.50 +0.4
3,243,984 + DvMF_2566 0.57 +2.0
3,243,992 - DvMF_2566 0.58 +0.4
3,244,116 - DvMF_2566 0.67 +0.3
3,244,192 - DvMF_2566 0.74 +0.3
3,244,238 - DvMF_2566 0.77 +0.3
3,244,351 + DvMF_2566 0.86 +0.5
3,244,466 + +0.9
3,244,730 + DvMF_2567 0.17 +0.5
3,244,735 + DvMF_2567 0.18 +1.0
3,244,749 - DvMF_2567 0.19 +0.9
3,244,834 + DvMF_2567 0.26 +0.2
3,244,869 + DvMF_2567 0.29 +1.4
3,244,909 + DvMF_2567 0.32 +0.3
3,244,941 - DvMF_2567 0.35 +1.6
3,244,970 + DvMF_2567 0.38 +0.6
3,245,001 + DvMF_2567 0.40 +0.9
3,245,268 + DvMF_2567 0.63 +0.9
3,245,460 - DvMF_2567 0.80 +0.4
3,245,653 + +0.6
3,245,791 + +0.2
3,245,855 + +0.9
3,245,855 + -0.1
3,245,878 - +0.5
3,245,915 - +0.5
3,245,977 - DvMF_2568 0.15 +0.5
3,246,247 + DvMF_2568 0.37 +0.5
3,246,516 + DvMF_2568 0.58 +1.3
3,246,630 - DvMF_2568 0.68 +0.4

Or see this region's nucleotide sequence