Experiment: 3 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1688 and DvMF_1689 are separated by 315 nucleotides DvMF_1689 and DvMF_1690 are separated by 27 nucleotides DvMF_1690 and DvMF_1691 are separated by 227 nucleotides DvMF_1691 and DvMF_1692 are separated by 296 nucleotides
DvMF_1688: DvMF_1688 - hypothetical protein (RefSeq), at 2,055,925 to 2,057,079
_1688
DvMF_1689: DvMF_1689 - hypothetical protein (RefSeq), at 2,057,395 to 2,057,658
_1689
DvMF_1690: DvMF_1690 - polysaccharide export protein (RefSeq), at 2,057,686 to 2,059,362
_1690
DvMF_1691: DvMF_1691 - hypothetical protein (RefSeq), at 2,059,590 to 2,059,991
_1691
DvMF_1692: DvMF_1692 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,060,288 to 2,061,853
_1692
Position (kb)
2057
2058
2059
2060 Strain fitness (log2 ratio)
-1
0
1 at 2056.803 kb on + strand, within DvMF_1688 at 2056.831 kb on - strand, within DvMF_1688 at 2057.014 kb on - strand at 2057.024 kb on - strand at 2057.104 kb on + strand at 2057.338 kb on + strand at 2057.354 kb on + strand at 2057.374 kb on + strand at 2057.402 kb on + strand at 2057.951 kb on + strand, within DvMF_1690 at 2058.233 kb on - strand, within DvMF_1690 at 2058.292 kb on - strand, within DvMF_1690 at 2058.460 kb on - strand, within DvMF_1690 at 2058.540 kb on + strand, within DvMF_1690 at 2058.801 kb on - strand, within DvMF_1690 at 2058.813 kb on - strand, within DvMF_1690 at 2058.898 kb on - strand, within DvMF_1690 at 2058.898 kb on - strand, within DvMF_1690 at 2058.903 kb on - strand, within DvMF_1690 at 2058.999 kb on + strand, within DvMF_1690 at 2059.098 kb on + strand, within DvMF_1690 at 2059.395 kb on + strand at 2059.547 kb on - strand at 2059.917 kb on + strand, within DvMF_1691 at 2060.222 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3 day starvation, 37C remove 2,056,803 + DvMF_1688 0.76 +1.3 2,056,831 - DvMF_1688 0.78 +0.6 2,057,014 - +0.3 2,057,024 - +0.9 2,057,104 + +0.5 2,057,338 + +0.7 2,057,354 + +1.0 2,057,374 + +0.5 2,057,402 + +0.7 2,057,951 + DvMF_1690 0.16 -0.2 2,058,233 - DvMF_1690 0.33 +0.7 2,058,292 - DvMF_1690 0.36 +0.6 2,058,460 - DvMF_1690 0.46 +0.3 2,058,540 + DvMF_1690 0.51 +0.2 2,058,801 - DvMF_1690 0.66 +0.1 2,058,813 - DvMF_1690 0.67 +0.4 2,058,898 - DvMF_1690 0.72 +0.0 2,058,898 - DvMF_1690 0.72 +0.8 2,058,903 - DvMF_1690 0.73 +0.1 2,058,999 + DvMF_1690 0.78 +0.4 2,059,098 + DvMF_1690 0.84 -0.1 2,059,395 + -0.1 2,059,547 - +0.9 2,059,917 + DvMF_1691 0.81 +1.1 2,060,222 + +0.8
Or see this region's nucleotide sequence