Experiment: 3 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1603 and DvMF_1604 are separated by 33 nucleotides DvMF_1604 and DvMF_1605 overlap by 4 nucleotides
DvMF_1603: DvMF_1603 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,973,144 to 1,974,928
_1603
DvMF_1604: DvMF_1604 - proton-translocating NADH-quinone oxidoreductase, chain M (RefSeq), at 1,974,962 to 1,976,521
_1604
DvMF_1605: DvMF_1605 - NADH dehydrogenase (quinone) (RefSeq), at 1,976,518 to 1,977,945
_1605
Position (kb)
1974
1975
1976
1977 Strain fitness (log2 ratio)
-2
-1
0
1 at 1974.154 kb on + strand, within DvMF_1603 at 1974.334 kb on + strand, within DvMF_1603 at 1974.342 kb on - strand, within DvMF_1603 at 1974.387 kb on + strand, within DvMF_1603 at 1974.441 kb on - strand, within DvMF_1603 at 1974.568 kb on + strand, within DvMF_1603 at 1974.749 kb on - strand, within DvMF_1603 at 1974.806 kb on - strand at 1974.812 kb on + strand at 1974.857 kb on + strand at 1974.867 kb on + strand at 1975.392 kb on - strand, within DvMF_1604 at 1975.602 kb on - strand, within DvMF_1604 at 1975.895 kb on - strand, within DvMF_1604 at 1976.143 kb on - strand, within DvMF_1604 at 1976.528 kb on + strand at 1976.546 kb on - strand at 1976.620 kb on + strand at 1976.735 kb on + strand, within DvMF_1605 at 1976.775 kb on + strand, within DvMF_1605 at 1976.925 kb on - strand, within DvMF_1605 at 1977.188 kb on + strand, within DvMF_1605 at 1977.421 kb on + strand, within DvMF_1605 at 1977.436 kb on + strand, within DvMF_1605 at 1977.454 kb on + strand, within DvMF_1605 at 1977.489 kb on + strand, within DvMF_1605
Per-strain Table
Position Strand Gene LocusTag Fraction 3 day starvation, 37C remove 1,974,154 + DvMF_1603 0.57 -0.5 1,974,334 + DvMF_1603 0.67 -0.3 1,974,342 - DvMF_1603 0.67 -0.2 1,974,387 + DvMF_1603 0.70 -0.1 1,974,441 - DvMF_1603 0.73 +0.4 1,974,568 + DvMF_1603 0.80 +0.2 1,974,749 - DvMF_1603 0.90 -1.1 1,974,806 - -0.4 1,974,812 + +0.0 1,974,857 + -0.6 1,974,867 + +1.4 1,975,392 - DvMF_1604 0.28 -0.7 1,975,602 - DvMF_1604 0.41 -0.9 1,975,895 - DvMF_1604 0.60 -0.1 1,976,143 - DvMF_1604 0.76 +0.5 1,976,528 + -0.8 1,976,546 - -1.9 1,976,620 + -0.5 1,976,735 + DvMF_1605 0.15 -0.4 1,976,775 + DvMF_1605 0.18 +0.3 1,976,925 - DvMF_1605 0.29 -0.8 1,977,188 + DvMF_1605 0.47 -0.7 1,977,421 + DvMF_1605 0.63 -0.5 1,977,436 + DvMF_1605 0.64 -0.6 1,977,454 + DvMF_1605 0.66 +0.0 1,977,489 + DvMF_1605 0.68 -0.2
Or see this region's nucleotide sequence