Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1521

Experiment: 3 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1519 and DvMF_1520 are separated by 15 nucleotidesDvMF_1520 and DvMF_1521 are separated by 125 nucleotidesDvMF_1521 and DvMF_1522 are separated by 12 nucleotides DvMF_1519: DvMF_1519 - respiratory-chain NADH dehydrogenase subunit 1 (RefSeq), at 1,875,462 to 1,876,310 _1519 DvMF_1520: DvMF_1520 - NADH ubiquinone oxidoreductase 20 kDa subunit (RefSeq), at 1,876,326 to 1,876,799 _1520 DvMF_1521: DvMF_1521 - hypothetical protein (RefSeq), at 1,876,925 to 1,877,317 _1521 DvMF_1522: DvMF_1522 - NADH-ubiquinone oxidoreductase chain 49kDa (RefSeq), at 1,877,330 to 1,878,406 _1522 Position (kb) 1876 1877 1878Strain fitness (log2 ratio) -1 0 1at 1876.125 kb on - strand, within DvMF_1519at 1876.221 kb on + strand, within DvMF_1519at 1876.320 kb on - strandat 1876.946 kb on - strandat 1876.946 kb on - strandat 1876.957 kb on + strandat 1876.987 kb on + strand, within DvMF_1521at 1877.116 kb on + strand, within DvMF_1521at 1877.666 kb on - strand, within DvMF_1522at 1877.970 kb on + strand, within DvMF_1522at 1878.079 kb on + strand, within DvMF_1522at 1878.184 kb on - strand, within DvMF_1522

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 day starvation, 37C
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1,876,125 - DvMF_1519 0.78 -0.4
1,876,221 + DvMF_1519 0.89 -0.1
1,876,320 - -0.3
1,876,946 - -0.6
1,876,946 - -1.4
1,876,957 + -0.2
1,876,987 + DvMF_1521 0.16 -1.2
1,877,116 + DvMF_1521 0.49 -0.6
1,877,666 - DvMF_1522 0.31 -0.6
1,877,970 + DvMF_1522 0.59 -0.2
1,878,079 + DvMF_1522 0.70 -0.2
1,878,184 - DvMF_1522 0.79 -0.3

Or see this region's nucleotide sequence