Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1471

Experiment: 3 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1470 and DvMF_1471 overlap by 4 nucleotidesDvMF_1471 and DvMF_1472 are separated by 459 nucleotidesDvMF_1472 and DvMF_1473 are separated by 147 nucleotides DvMF_1470: DvMF_1470 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 1,801,188 to 1,802,486 _1470 DvMF_1471: DvMF_1471 - hypothetical protein (RefSeq), at 1,802,483 to 1,803,349 _1471 DvMF_1472: DvMF_1472 - hypothetical protein (RefSeq), at 1,803,809 to 1,804,150 _1472 DvMF_1473: DvMF_1473 - anaerobic ribonucleoside triphosphate reductase (RefSeq), at 1,804,298 to 1,806,412 _1473 Position (kb) 1802 1803 1804Strain fitness (log2 ratio) -1 0 1at 1801.792 kb on - strand, within DvMF_1470at 1801.803 kb on - strand, within DvMF_1470at 1801.810 kb on - strand, within DvMF_1470at 1801.810 kb on - strand, within DvMF_1470at 1802.243 kb on + strand, within DvMF_1470at 1802.409 kb on + strandat 1802.610 kb on + strand, within DvMF_1471at 1802.697 kb on - strand, within DvMF_1471at 1803.228 kb on + strand, within DvMF_1471at 1804.091 kb on + strand, within DvMF_1472at 1804.196 kb on + strandat 1804.226 kb on - strandat 1804.274 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 day starvation, 37C
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1,801,792 - DvMF_1470 0.46 +0.8
1,801,803 - DvMF_1470 0.47 +0.6
1,801,810 - DvMF_1470 0.48 +0.1
1,801,810 - DvMF_1470 0.48 +0.9
1,802,243 + DvMF_1470 0.81 +0.3
1,802,409 + -0.2
1,802,610 + DvMF_1471 0.15 +0.5
1,802,697 - DvMF_1471 0.25 +0.9
1,803,228 + DvMF_1471 0.86 +1.3
1,804,091 + DvMF_1472 0.82 +0.1
1,804,196 + +0.4
1,804,226 - -1.0
1,804,274 - +1.0

Or see this region's nucleotide sequence