Experiment: 3 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1077 and DvMF_1078 are separated by 467 nucleotides DvMF_1078 and DvMF_1079 overlap by 4 nucleotides DvMF_1079 and DvMF_1080 are separated by 143 nucleotides
DvMF_1077: DvMF_1077 - hypothetical protein (RefSeq), at 1,317,524 to 1,318,327
_1077
DvMF_1078: DvMF_1078 - hypothetical protein (RefSeq), at 1,318,795 to 1,319,331
_1078
DvMF_1079: DvMF_1079 - hypothetical protein (RefSeq), at 1,319,328 to 1,319,684
_1079
DvMF_1080: DvMF_1080 - hypothetical protein (RefSeq), at 1,319,828 to 1,320,598
_1080
Position (kb)
1318
1319
1320 Strain fitness (log2 ratio)
-1
0
1
2 at 1318.070 kb on - strand, within DvMF_1077 at 1318.373 kb on + strand at 1318.378 kb on + strand at 1318.413 kb on - strand at 1318.508 kb on - strand at 1318.701 kb on - strand at 1318.970 kb on + strand, within DvMF_1078 at 1319.042 kb on - strand, within DvMF_1078 at 1319.084 kb on + strand, within DvMF_1078 at 1319.106 kb on - strand, within DvMF_1078 at 1319.108 kb on + strand, within DvMF_1078 at 1319.298 kb on - strand at 1319.306 kb on + strand at 1319.478 kb on + strand, within DvMF_1079 at 1319.735 kb on + strand at 1319.814 kb on - strand at 1319.908 kb on + strand, within DvMF_1080 at 1319.982 kb on - strand, within DvMF_1080 at 1320.016 kb on - strand, within DvMF_1080 at 1320.065 kb on - strand, within DvMF_1080 at 1320.110 kb on + strand, within DvMF_1080 at 1320.110 kb on + strand, within DvMF_1080 at 1320.146 kb on - strand, within DvMF_1080 at 1320.232 kb on - strand, within DvMF_1080 at 1320.233 kb on - strand, within DvMF_1080
Per-strain Table
Position Strand Gene LocusTag Fraction 3 day starvation, 37C remove 1,318,070 - DvMF_1077 0.68 +0.8 1,318,373 + +0.3 1,318,378 + +0.5 1,318,413 - +0.7 1,318,508 - +0.7 1,318,701 - +0.7 1,318,970 + DvMF_1078 0.33 +0.3 1,319,042 - DvMF_1078 0.46 +0.5 1,319,084 + DvMF_1078 0.54 +0.3 1,319,106 - DvMF_1078 0.58 -0.6 1,319,108 + DvMF_1078 0.58 +0.2 1,319,298 - +0.5 1,319,306 + +0.1 1,319,478 + DvMF_1079 0.42 +0.1 1,319,735 + +0.6 1,319,814 - +1.2 1,319,908 + DvMF_1080 0.10 +2.4 1,319,982 - DvMF_1080 0.20 +0.3 1,320,016 - DvMF_1080 0.24 -0.6 1,320,065 - DvMF_1080 0.31 +0.2 1,320,110 + DvMF_1080 0.37 +0.7 1,320,110 + DvMF_1080 0.37 +0.8 1,320,146 - DvMF_1080 0.41 -0.2 1,320,232 - DvMF_1080 0.52 -0.0 1,320,233 - DvMF_1080 0.53 -0.0
Or see this region's nucleotide sequence