Experiment: 3 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt secD and DvMF_0542 are separated by 125 nucleotides DvMF_0542 and DvMF_0543 are separated by 224 nucleotides DvMF_0543 and DvMF_0544 are separated by 317 nucleotides
DvMF_0541: secD - preprotein translocase subunit SecD (RefSeq), at 636,283 to 637,881
secD
DvMF_0542: DvMF_0542 - preprotein translocase, YajC subunit (RefSeq), at 638,007 to 638,408
_0542
DvMF_0543: DvMF_0543 - sodium/hydrogen exchanger (RefSeq), at 638,633 to 640,528
_0543
DvMF_0544: DvMF_0544 - glutamate synthase alpha subunit domain protein (RefSeq), at 640,846 to 641,691
_0544
Position (kb) 638
639
640
641 Strain fitness (log2 ratio) -1
0
1 at 638.167 kb on + strand, within DvMF_0542 at 638.220 kb on - strand, within DvMF_0542 at 638.522 kb on + strand at 638.553 kb on - strand at 638.675 kb on - strand at 638.755 kb on + strand at 639.086 kb on + strand, within DvMF_0543 at 639.126 kb on + strand, within DvMF_0543 at 639.131 kb on + strand, within DvMF_0543 at 639.182 kb on - strand, within DvMF_0543 at 639.512 kb on + strand, within DvMF_0543 at 639.531 kb on + strand, within DvMF_0543 at 639.531 kb on + strand, within DvMF_0543 at 639.602 kb on + strand, within DvMF_0543 at 639.734 kb on + strand, within DvMF_0543 at 639.885 kb on + strand, within DvMF_0543 at 639.939 kb on - strand, within DvMF_0543 at 639.954 kb on - strand, within DvMF_0543 at 640.185 kb on + strand, within DvMF_0543 at 640.196 kb on + strand, within DvMF_0543 at 640.469 kb on + strand at 640.534 kb on + strand at 640.544 kb on + strand at 640.544 kb on + strand at 640.621 kb on + strand at 640.801 kb on + strand at 640.809 kb on - strand at 640.886 kb on + strand at 640.900 kb on - strand at 641.064 kb on + strand, within DvMF_0544 at 641.106 kb on - strand, within DvMF_0544 at 641.341 kb on - strand, within DvMF_0544 at 641.346 kb on - strand, within DvMF_0544
Per-strain Table
Position Strand Gene LocusTag Fraction 3 day starvation, 37C remove 638,167 + DvMF_0542 0.40 -0.2 638,220 - DvMF_0542 0.53 -0.5 638,522 + +0.6 638,553 - -0.2 638,675 - +1.0 638,755 + +0.1 639,086 + DvMF_0543 0.24 +0.9 639,126 + DvMF_0543 0.26 +0.5 639,131 + DvMF_0543 0.26 +1.0 639,182 - DvMF_0543 0.29 +0.4 639,512 + DvMF_0543 0.46 +0.0 639,531 + DvMF_0543 0.47 +1.4 639,531 + DvMF_0543 0.47 +0.9 639,602 + DvMF_0543 0.51 +0.3 639,734 + DvMF_0543 0.58 +0.7 639,885 + DvMF_0543 0.66 +0.8 639,939 - DvMF_0543 0.69 +0.6 639,954 - DvMF_0543 0.70 +0.9 640,185 + DvMF_0543 0.82 +0.3 640,196 + DvMF_0543 0.82 +0.6 640,469 + +0.2 640,534 + -0.1 640,544 + +0.7 640,544 + +0.4 640,621 + +0.4 640,801 + +0.7 640,809 - +0.3 640,886 + +0.4 640,900 - +0.3 641,064 + DvMF_0544 0.26 +0.6 641,106 - DvMF_0544 0.31 +0.4 641,341 - DvMF_0544 0.59 +0.5 641,346 - DvMF_0544 0.59 +0.2
Or see this region's nucleotide sequence