Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0329

Experiment: 3 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0328 and DvMF_0329 are separated by 264 nucleotidesDvMF_0329 and DvMF_0330 are separated by 273 nucleotides DvMF_0328: DvMF_0328 - hypothetical protein (RefSeq), at 382,768 to 383,256 _0328 DvMF_0329: DvMF_0329 - hypothetical protein (RefSeq), at 383,521 to 384,408 _0329 DvMF_0330: DvMF_0330 - iron-containing alcohol dehydrogenase (RefSeq), at 384,682 to 385,824 _0330 Position (kb) 383 384 385Strain fitness (log2 ratio) -1 0 1at 382.731 kb on - strandat 383.032 kb on + strand, within DvMF_0328at 383.318 kb on - strandat 383.470 kb on + strandat 383.551 kb on + strandat 383.559 kb on - strandat 383.559 kb on - strandat 383.559 kb on - strandat 384.053 kb on + strand, within DvMF_0329at 384.061 kb on - strand, within DvMF_0329at 384.061 kb on - strand, within DvMF_0329at 384.159 kb on + strand, within DvMF_0329at 384.209 kb on + strand, within DvMF_0329at 384.360 kb on - strandat 384.363 kb on - strandat 384.411 kb on + strandat 384.465 kb on - strandat 384.496 kb on + strandat 384.656 kb on + strandat 384.656 kb on + strandat 384.781 kb on + strandat 384.799 kb on + strand, within DvMF_0330at 384.930 kb on - strand, within DvMF_0330at 384.949 kb on - strand, within DvMF_0330

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 day starvation, 37C
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382,731 - -0.8
383,032 + DvMF_0328 0.54 +0.6
383,318 - +0.3
383,470 + +0.9
383,551 + +0.5
383,559 - +0.2
383,559 - +0.1
383,559 - +0.8
384,053 + DvMF_0329 0.60 -0.4
384,061 - DvMF_0329 0.61 +0.6
384,061 - DvMF_0329 0.61 +0.2
384,159 + DvMF_0329 0.72 +0.5
384,209 + DvMF_0329 0.77 +0.9
384,360 - +0.9
384,363 - +0.6
384,411 + +0.7
384,465 - +0.4
384,496 + +0.8
384,656 + +0.6
384,656 + -0.1
384,781 + -0.8
384,799 + DvMF_0330 0.10 -0.3
384,930 - DvMF_0330 0.22 +0.0
384,949 - DvMF_0330 0.23 -0.2

Or see this region's nucleotide sequence